Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120060.Seq
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.9  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = +2

Query: 341 KNILFVINSPDVYKNPHSDTYIVFGEAKIEDLSTQATMAAAERF 472
           K I+   +S  +++ P++   I++   KIE  +    +   E+F
Sbjct: 423 KRIIDYYHSYKMHQKPYNKDEIIYPNLKIESFTVDKLITYFEQF 466


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/44 (22%), Positives = 22/44 (50%)
 Frame = +2

Query: 341 KNILFVINSPDVYKNPHSDTYIVFGEAKIEDLSTQATMAAAERF 472
           K I+   +S  +++ P++   I++   KIE  +    +   E+F
Sbjct: 423 KRIIDYYHSYKMHQKPYNKDEIIYPNLKIESFTVDKLITYFEQF 466


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 483 SGALNLSAAAMVACVDKSSILASP 412
           SG  +   AA+ A V  SSI++SP
Sbjct: 371 SGKKSKFNAAVAAAVQSSSIVSSP 394


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 519 SSCGASLPVAVVSGALNLSAAAMVACVDKSSI 424
           S   A +PV V+   + LSA+AMV  +   S+
Sbjct: 173 SKAPAQIPVDVLVLTVTLSASAMVLGLSSYSL 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,733
Number of Sequences: 438
Number of extensions: 2909
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)