Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120048.Seq
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    28   0.11 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.4  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   4.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 312  LSSLSSRSACPRCGKSRMYFCYVCFIP 392
            ++S +   AC    + R+Y CYVC+ P
Sbjct: 1048 MASAAPMPACFDSDRERLYDCYVCYSP 1074


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 298 QTLNRLVLYLVEVLAHVAASQECTFVM 378
           +T+N +V  L E  AH +AS+E    M
Sbjct: 595 KTINAVVNALAEQAAHASASEESVHSM 621


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 298 QTLNRLVLYLVEVLAHVAASQECTFVM 378
           +T+N +V  L E  AH +AS+E    M
Sbjct: 563 KTINAVVNALAEQAAHASASEESVHSM 589


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 542 IPDYPTDGKVVLLFPGAEAKSVRDLFNQQQNQPSYSE 652
           + DY  +GKV+LL      KS   +++ + +   Y E
Sbjct: 128 VADYKIEGKVLLLPVRGAGKSNITMYDLKSHNDIYCE 164


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 530  TYPDIPDYPTDGKVVLLFPGA 592
            T  D+P  P D KVV+  P A
Sbjct: 1209 TEEDVPGSPADIKVVVSSPQA 1229


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 530  TYPDIPDYPTDGKVVLLFPGA 592
            T  D+P  P D KVV+  P A
Sbjct: 1205 TEEDVPGSPADIKVVVSSPQA 1225


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,113
Number of Sequences: 438
Number of extensions: 4512
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)