Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021144
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    24   1.9  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   3.4  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   7.8  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
 Frame = -3

Query: 116 YVN-GLIIAN---CYHCYLFFIP*FLVI 45
           Y N GL+ A+   CY  +++F+P FL+I
Sbjct: 206 YFNRGLLSASYLVCYGIWVYFVPLFLII 233


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
 Frame = -3

Query: 116 YVN-GLIIAN---CYHCYLFFIP*FLVI 45
           Y N GL+ A+   CY  +++F+P FL+I
Sbjct: 82  YFNRGLLSASYLVCYGIWVYFVPLFLII 109


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 93  SNDQTIDVSLKSQ*HLTFDVYDTIRSQVITIDNTHNV 203
           SN   ID SLK    + ++V        IT+ N  NV
Sbjct: 28  SNQLIIDKSLKGWKEVEYEVVRDAYDNCITVCNMENV 64


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 432 STVWIMEGRRKEHHL 476
           S V+ M+ +RKEHHL
Sbjct: 188 SFVFGMKEKRKEHHL 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,874
Number of Sequences: 438
Number of extensions: 4446
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)