Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021124
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   8.5  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.5  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   8.5  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 31  PKYELKIRDFFINIQLIALYTYT 99
           P YEL    FF+   LI L  YT
Sbjct: 211 PLYELSTIIFFLIPMLIILVVYT 233


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 409 LQAYHSIFSAHGSYLLVCTVACYV 338
           + + + IFSA GS+ L   V  YV
Sbjct: 194 MDSSYVIFSAMGSFFLPMLVMLYV 217


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 211 TYVVQ*TKINNVQNTHNRVRSSFKN 285
           T+ V   + +N+QNT+N+  ++ KN
Sbjct: 412 THCVNNNQNDNIQNTNNQNDNNQKN 436


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 203 KCF*NDKLFHNLNRFRKGNHVIHIRSL*YVTKNINVYVYNAINCIFIKKS 54
           +C   +K+  +L R R+    +H R       NI   VY+++N +   KS
Sbjct: 4   RCEPCNKILTSLTRLRRHIQNVHTRPSKEPICNICKRVYSSLNSLRNHKS 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,520
Number of Sequences: 438
Number of extensions: 4392
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)