Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0096
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    42   3e-06
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    31   0.008
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    31   0.008
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.54 
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   2.9  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   8.7  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 42.3 bits (95), Expect = 3e-06
 Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
 Frame = +3

Query: 408 KMMSMSSPLMEISIDGDTMTIKNSSLLRTVEHKFKLGEEYEEK-MPNSIIKSVTTI 572
           K+ S  SP++E++ +    T+K +S  +  E KFKLGEE+EE+ +    +KSV T+
Sbjct: 32  KVGSSVSPVVELTENNGLYTLKTTSPFKNTEIKFKLGEEFEEETVDGRKVKSVCTL 87


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 31.1 bits (67), Expect = 0.008
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 429 PLMEISIDGDTMTIKNSSLLRTVEHKFKLGEEYEEKMPNSIIKSVTTIT 575
           P  E+S +GD  T  +SS   T    FK+   +EE +P+   +   T+T
Sbjct: 35  PSFELSKNGDEWTFTSSSGDNTYTKTFKMNVPFEETLPSLPDRKFQTVT 83


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 31.1 bits (67), Expect = 0.008
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 429 PLMEISIDGDTMTIKNSSLLRTVEHKFKLGEEYEEKMPNSIIKSVTTIT 575
           P  E+S +GD  T  +SS   T    FK+   +EE +P+   +   T+T
Sbjct: 37  PSFELSKNGDEWTFTSSSGDNTYTKTFKMNVPFEETLPSLPDRKFQTVT 85


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 181 LYFINCNYLSFIRD**FFDKI*IT 252
           L FIN NY++ +R   F DK+ +T
Sbjct: 621 LLFINNNYINLVRPNTFTDKVNLT 644


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = +2

Query: 323 QSLESTSTTRTKTLMIISVRSVYHLXGRXNDVNVITINGNFN*WGYYDYKKFIIVTNSRT 502
           +S + T   R++   IIS  S   +    N  N    N N+N   Y +YKK     N   
Sbjct: 66  RSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNYNYNNNNYNNYKKLYYNINYIE 125

Query: 503 QI 508
           QI
Sbjct: 126 QI 127


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 419 NVITINGNFN*WGYYDYKKFIIVTNSRTQI 508
           NV+  NGNFN     D  + ++  N   Q+
Sbjct: 71  NVVDENGNFNEKNTRDIVQAVLDDNETDQL 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,638
Number of Sequences: 438
Number of extensions: 2840
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)