Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C10
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   6.0  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   6.0  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   8.0  

>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 98  VTIGEMFPTNVKLYASCIAHIY 163
           + +G +FP + K  ASC  ++Y
Sbjct: 57  IVLGGLFPVHEKGGASCGPNVY 78


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 321 EAKDFPLVSGNTANMNTRPRNENAAKPQ 238
           + +D P V+G T+     P  E  AKP+
Sbjct: 328 DVQDVPWVTGVTSEEGLYPVAEFIAKPE 355


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 321 EAKDFPLVSGNTANMNTRPRNENAAKPQ 238
           + +D P V+G T+     P  E  AKP+
Sbjct: 328 DVQDVPWVTGVTSEEGLYPVAEFIAKPE 355


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 168 PV*MWAIHEAYSLTLVGNISPIVTYGT 88
           P  +W   +  SL + GN++ I T+ T
Sbjct: 43  PKPLWTGKQISSLIIPGNVNMIRTHST 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,559
Number of Sequences: 438
Number of extensions: 3179
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)