Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B06
         (574 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   0.93 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   0.93 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   0.93 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.6  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 156 EPVDDDSAVKKFGSAKAISSAQFFGEQDSRW 248
           +P D+  A+K FGS KA+   +   +    W
Sbjct: 49  QPTDNKLAMKLFGSKKALMKERIRQKAAGHW 79


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 156 EPVDDDSAVKKFGSAKAISSAQFFGEQDSRW 248
           +P D+  A+K FGS KA+   +   +    W
Sbjct: 49  QPTDNKLAMKLFGSKKALMKERIRQKAAGHW 79


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 156 EPVDDDSAVKKFGSAKAISSAQFFGEQDSRW 248
           +P D+  A+K FGS KA+   +   +    W
Sbjct: 49  QPTDNKLAMKLFGSKKALMKERIRQKAAGHW 79


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 111 AAPAQSAGKPRGRRTEPVDDDSAVKKFGSAK 203
           A   Q AGKP+    +  DD+S  +   S K
Sbjct: 72  AGGIQQAGKPKEETDDKDDDESDNENIKSQK 102


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 360 SAPDLDEVRESVRAGVTRV 416
           S  DLD   E++R+G T V
Sbjct: 521 SPADLDRALEAIRSGQTSV 539


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,768
Number of Sequences: 438
Number of extensions: 2070
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)