Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C05
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   1.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.6  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 22/83 (26%), Positives = 26/83 (31%)
 Frame = +2

Query: 308 SALNALRKSRQHYDAVLVAGGTEVXXXXXXXXXXSPYLLEALXXXXXXXXXXXXXXXXYR 487
           SA   LR      D  L   G  +          SPY  E L                  
Sbjct: 20  SAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFRELLKSTPCKHPVIV------- 72

Query: 488 VEDVDADALRELVEYAYTGRVRV 556
           ++DV    L  LVE+ Y G V V
Sbjct: 73  LQDVAFSDLHALVEFIYHGEVNV 95


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 385 PQSSPRRCLAIPTRSVITSPR 447
           P SSPR   A  T S  TSPR
Sbjct: 823 PASSPRYLSAAATSSTSTSPR 843


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,084
Number of Sequences: 438
Number of extensions: 4905
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)