Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_B13
(922 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.079
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 29 0.079
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.10
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.10
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.10
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.10
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.10
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 28 0.10
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 24 1.7
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 23 3.0
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 3.9
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 23 5.2
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 5.2
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 23 5.2
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 6.8
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 6.8
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 6.8
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 22 9.0
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 28.7 bits (61), Expect = 0.079
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +2
Query: 122 MIDSLLATYDRDSPPELQNRSQP-DPAF*YMLTFV----SPSPPLRIQADLQMNWIDQRL 286
+++ LL++Y+ P + N S+P + F L + + L A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERP-VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNL 116
Query: 287 TWNAGEWG 310
WN E+G
Sbjct: 117 QWNESEYG 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 28.7 bits (61), Expect = 0.079
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +2
Query: 122 MIDSLLATYDRDSPPELQNRSQP-DPAF*YMLTFV----SPSPPLRIQADLQMNWIDQRL 286
+++ LL++Y+ P + N S+P + F L + + L A L++ W+D L
Sbjct: 58 LLNELLSSYNTLERP-VANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNL 116
Query: 287 TWNAGEWG 310
WN E+G
Sbjct: 117 QWNESEYG 124
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.10
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 239 LRIQADLQMNWIDQRLTWNAGEWG 310
L A L++ W+D L WN E+G
Sbjct: 33 LTTNAWLKLEWVDYNLQWNESEYG 56
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.10
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 239 LRIQADLQMNWIDQRLTWNAGEWG 310
L A L++ W+D L WN E+G
Sbjct: 33 LTTNAWLKLEWVDYNLQWNESEYG 56
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.10
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 239 LRIQADLQMNWIDQRLTWNAGEWG 310
L A L++ W+D L WN E+G
Sbjct: 33 LTTNAWLKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.10
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 239 LRIQADLQMNWIDQRLTWNAGEWG 310
L A L++ W+D L WN E+G
Sbjct: 33 LTTNAWLKLEWVDYNLQWNESEYG 56
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.10
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 239 LRIQADLQMNWIDQRLTWNAGEWG 310
L A L++ W+D L WN E+G
Sbjct: 33 LTTNAWLKLEWVDYNLQWNESEYG 56
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 28.3 bits (60), Expect = 0.10
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 239 LRIQADLQMNWIDQRLTWNAGEWG 310
L A L++ W+D L WN E+G
Sbjct: 33 LTTNAWLKLEWVDYNLQWNESEYG 56
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 24.2 bits (50), Expect = 1.7
Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 5/94 (5%)
Frame = +2
Query: 77 IASAAECENATSLSLMIDSLLATYDRDSPPELQNRSQPDPAF*YMLTFVSP----SPPLR 244
I SA C + D LL+ Y+R P N L+ + L
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 245 IQADLQMNWIDQRLTWNAGEWGCSTGL-VSSERL 343
L+ W D + W+ E+G T L V SE +
Sbjct: 69 TNVWLEHEWQDHKFQWDPAEYGGVTELYVPSEHI 102
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 23.4 bits (48), Expect = 3.0
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +2
Query: 257 LQMNWIDQRLTWNAGEWG 310
++ W D +L WN E+G
Sbjct: 86 VEQRWNDYKLKWNPEEYG 103
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.0 bits (47), Expect = 3.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +2
Query: 257 LQMNWIDQRLTWNAGEWG 310
L++ W D + WN ++G
Sbjct: 76 LKLEWNDVNMRWNVSDYG 93
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 22.6 bits (46), Expect = 5.2
Identities = 6/18 (33%), Positives = 12/18 (66%)
Frame = +2
Query: 257 LQMNWIDQRLTWNAGEWG 310
++ +W D +L W+ E+G
Sbjct: 77 VEQSWYDYKLKWDPKEYG 94
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 22.6 bits (46), Expect = 5.2
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +2
Query: 257 LQMNWIDQRLTWNAGEWG 310
++ W D +L WN ++G
Sbjct: 73 VEQEWNDYKLKWNPDDYG 90
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 22.6 bits (46), Expect = 5.2
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +2
Query: 269 WIDQRLTWNAGEW 307
W D L WNA E+
Sbjct: 62 WTDHHLKWNASEF 74
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 6.8
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +2
Query: 257 LQMNWIDQRLTWNAGEWG 310
++ +W D +L W E+G
Sbjct: 81 VEQSWYDYKLRWEPKEYG 98
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 6.8
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +2
Query: 257 LQMNWIDQRLTWNAGEWG 310
++ +W D +L W E+G
Sbjct: 81 VEQSWYDYKLRWEPKEYG 98
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.2 bits (45), Expect = 6.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 322 PSATAPLPCVPSQS 281
PSA AP+P +P+ S
Sbjct: 411 PSAGAPMPPIPNMS 424
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.8 bits (44), Expect = 9.0
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Frame = +2
Query: 122 MIDSLLATYDRDSPPELQNRSQPDPAF*YMLTFVSPSPPLR-------IQADLQMNWIDQ 280
++D++L YD P +N + PA + FV + +Q + W+D+
Sbjct: 35 VLDNILGGYDARIRPSGENATD-GPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDE 93
Query: 281 RLTWN 295
RL +N
Sbjct: 94 RLRFN 98
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,791
Number of Sequences: 438
Number of extensions: 2128
Number of successful extensions: 22
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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