Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40075
         (862 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23370.1 68417.m03370 hypothetical protein predicted proteins...    28   7.0  
At1g78720.1 68414.m09175 protein transport protein sec61, putati...    28   7.0  

>At4g23370.1 68417.m03370 hypothetical protein predicted proteins,
           Arabidopsis thaliana contains Pfam profile PF03080:
           Arabidopsis proteins of unknown function
          Length = 1021

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 587 SIPIWVNAHVTNKNVGLCALGVEC 658
           S+P W+N +++ ++ GL   G+ C
Sbjct: 705 SVPEWINRNISGRSFGLLQEGISC 728


>At1g78720.1 68414.m09175 protein transport protein sec61, putative
           similar to SP|P38377 Protein transport protein Sec61
           alpha subunit isoform 1 (Sec61 alpha- 1) {Canis
           familiaris}; contains Pfam profile PF00344: eubacterial
           secY protein
          Length = 475

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 776 PFYWKTLKLYLSRGGIFGLGIT 841
           PFYW  + L  SRG +  LGIT
Sbjct: 63  PFYWMRVILASSRGTVMELGIT 84


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,780,507
Number of Sequences: 28952
Number of extensions: 369774
Number of successful extensions: 802
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)