Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40072
(816 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04870.1 68418.m00510 calcium-dependent protein kinase isofor... 31 0.69
At2g25620.1 68415.m03069 protein phosphatase 2C, putative / PP2C... 31 1.2
At3g28790.1 68416.m03593 expressed protein 30 1.6
At5g64670.1 68418.m08127 ribosomal protein L15 family protein 30 2.1
At5g36740.1 68418.m04402 PHD finger family protein 29 3.7
At5g36670.1 68418.m04388 PHD finger family protein 29 3.7
At4g06603.1 68417.m01028 expressed protein 29 4.9
At4g39690.1 68417.m05616 expressed protein 28 6.4
At2g33793.1 68415.m04145 expressed protein 28 6.4
At5g07340.1 68418.m00838 calnexin, putative identical to calnexi... 28 8.5
At2g47670.1 68415.m05953 invertase/pectin methylesterase inhibit... 28 8.5
At2g02060.1 68415.m00141 calcium-dependent protein kinase-relate... 28 8.5
At1g76050.2 68414.m08832 pseudouridine synthase family protein c... 28 8.5
At1g76050.1 68414.m08831 pseudouridine synthase family protein c... 28 8.5
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 28 8.5
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 28 8.5
>At5g04870.1 68418.m00510 calcium-dependent protein kinase isoform
AK1 (AK1) identical to calcium-dependent protein kinase,
isoform AK1 (CDPK) [Arabidopsis thaliana]
SWISS-PROT:Q06850; contains protein kinase domain,
Pfam:PF00069; contains EF hand domain (calcium-binding
EF-hand), Pfam:PF00036, INTERPRO:IPR002048
Length = 610
Score = 31.5 bits (68), Expect = 0.69
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Frame = +3
Query: 504 ENTERVVPIVETGAPYKKDEPVEKTTVETLD--VSTTQEPKTSAPAVVTAAPETRGRRKN 677
E R+ V+ P + P T VET D + T +P+T + + PET+ K+
Sbjct: 46 ELRSRLSDEVQNKPPEQVTMPKPGTDVETKDREIRTESKPETLEEISLESKPETKQETKS 105
Query: 678 RPRPPESMKRQKKTT*FPHGKRISA 752
+P K H KR+S+
Sbjct: 106 ETKPESKPDPPAKPKKPKHMKRVSS 130
>At2g25620.1 68415.m03069 protein phosphatase 2C, putative / PP2C,
putative
Length = 392
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 154 RELVICNGDGCAITSLSRAGKAVTVAKPAKAMKTAKRR 41
R LV+ N C LSR GKA+ +++ K M + +RR
Sbjct: 201 RSLVVANAGDCRAV-LSRQGKAIEMSRDHKPMSSKERR 237
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/68 (32%), Positives = 31/68 (45%)
Frame = +2
Query: 542 RSVQEGRACRKDDSRNLGRFYDSGAEDISSSGSDCSTGNPREKKEPTTPSGIDEATEKDN 721
+SV E R D+S + G D A SSSGSD S+ + E T G + ++
Sbjct: 168 KSVAEKRGKSIDES-SYGLDVDVNASIGSSSGSDGSSSSDNESSSNTKSQGTSSKSGSES 226
Query: 722 VIPTRETN 745
+ ETN
Sbjct: 227 TAGSIETN 234
>At5g64670.1 68418.m08127 ribosomal protein L15 family protein
Length = 281
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -1
Query: 651 VLQSLPLELMSSAPES*KRPRFLLSS-FLQARPSCTERQSRQ*VQRALYFRFINIFA 484
+L + L++S+ +PRF++SS LQ RPS Q RAL F+ I ++
Sbjct: 6 LLSIISTSLINSSFHQTAKPRFIISSPLLQCRPSPISTQIPTSTSRALSFQGIRAYS 62
>At5g36740.1 68418.m04402 PHD finger family protein
Length = 1179
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 567 VEKTTVETLDVSTTQEPKTSAPAVVTAAPETRGRR--KNRPRPPESMKRQK 713
V++ ++ L + +TS + PE+ GRR + R RPP K++K
Sbjct: 283 VDRISLSRLRGRPPKTKETSVSLYIEKGPESNGRRMVRKRGRPPTPQKKRK 333
>At5g36670.1 68418.m04388 PHD finger family protein
Length = 1193
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 567 VEKTTVETLDVSTTQEPKTSAPAVVTAAPETRGRR--KNRPRPPESMKRQK 713
V++ ++ L + +TS + PE+ GRR + R RPP K++K
Sbjct: 283 VDRISLSRLRGRPPKTKETSVSLYIEKGPESNGRRMVRKRGRPPTPQKKRK 333
>At4g06603.1 68417.m01028 expressed protein
Length = 786
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +3
Query: 543 APYKKDEPVEKTTVETLDVSTTQ----EPKTSAPAVVTAAPETRGRRKNRPR-PPESMKR 707
AP + V T +DV+T + EP +AP V A P + R R ES K+
Sbjct: 432 APEASRDGVNPDTAGPVDVTTAEAQGAEPSAAAPEAVVALPASDKAAGKRIRVDDESSKK 491
Query: 708 QKK 716
+KK
Sbjct: 492 KKK 494
>At4g39690.1 68417.m05616 expressed protein
Length = 650
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 638 SDCSTGNPREKKEPTTPSGIDEATEKDNVIPTR 736
SD T E PSG++++TEKD + T+
Sbjct: 112 SDALTEKLEEAHHLNVPSGVEDSTEKDGKVETQ 144
>At2g33793.1 68415.m04145 expressed protein
Length = 212
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +3
Query: 660 RGRRKNRPRPPESMKRQKKTT*FPHGKRISALSDI*YTLLMVSVFNKK 803
RG ++ RP PP+S+K+ P + SD + + F +K
Sbjct: 6 RGTKRTRPEPPQSLKKPTPKAKLPDELDVDVSSDFKGIMSALQQFREK 53
>At5g07340.1 68418.m00838 calnexin, putative identical to calnexin
homolog 2 from Arabidopsis thaliana [SP|Q38798], strong
similarity to calnexin homolog 1, Arabidopsis thaliana,
EMBL:AT08315 [SP|P29402]; contains Pfam profile PF00262
calreticulin family
Length = 532
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 567 VEKTTVETLDVSTTQEPKTSAPAVVTAAPETRGRRK 674
VEK ET ++T E KT A AAP R R+
Sbjct: 495 VEKKKPETAAETSTSEAKTEEKAEAVAAPRKRQTRR 530
>At2g47670.1 68415.m05953 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Lycopersicon esculentum SP|Q43143, Arabidopsis thaliana
SP|Q42534; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 208
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 551 VRSASLDNRYNALCIFVLSTFSLIGAVTTRYPSEVSSAVT 432
VR+A RYN LC+ L F+++ T + S AVT
Sbjct: 49 VRNACNVTRYNRLCVRTLWPFAIVARNNTSKWARASVAVT 88
>At2g02060.1 68415.m00141 calcium-dependent protein kinase-related /
CDPK-related contains TIGRFAM TIGR01557: myb-like
DNA-binding domain, SHAQKYF class; contains Pfam
PF00249: Myb-like DNA-binding domain; similar to CDPK
substrate protein 1; CSP1 (GI:6942190) [Mesembryanthemum
crystallinum].
Length = 626
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +2
Query: 575 DDSRNLGRFYDSGAEDISSSGSDCSTGNPREKKEPTTPSGIDEATEKDNVI 727
D S L R + S D SSS S + +P E +EP + A KD +
Sbjct: 291 DSSSTLSRIFPS-VNDSSSSPSPSPSLSPEEIEEPKLEEVLRRAATKDGTV 340
>At1g76050.2 68414.m08832 pseudouridine synthase family protein
contains Pfam profiles: PF00849 RNA pseudouridylate
synthase, PF01479: S4 domain
Length = 430
Score = 27.9 bits (59), Expect = 8.5
Identities = 23/66 (34%), Positives = 35/66 (53%)
Frame = -2
Query: 515 LCIFVLSTFSLIGAVTTRYPSEVSSAVTSAALEFTGRL*VWKNWLANTSWSSSLASCDPW 336
L I L +FSL A + RYPS SS++ S F ++ N++ +S +L +C P
Sbjct: 2 LSISQLPSFSLTTAKSLRYPSSPSSSL-SIFFSFFPKV---SNFVRASSGIPNLVACSP- 56
Query: 335 TKIKSP 318
T+I P
Sbjct: 57 TEIIIP 62
>At1g76050.1 68414.m08831 pseudouridine synthase family protein
contains Pfam profiles: PF00849 RNA pseudouridylate
synthase, PF01479: S4 domain
Length = 313
Score = 27.9 bits (59), Expect = 8.5
Identities = 23/66 (34%), Positives = 35/66 (53%)
Frame = -2
Query: 515 LCIFVLSTFSLIGAVTTRYPSEVSSAVTSAALEFTGRL*VWKNWLANTSWSSSLASCDPW 336
L I L +FSL A + RYPS SS++ S F ++ N++ +S +L +C P
Sbjct: 2 LSISQLPSFSLTTAKSLRYPSSPSSSL-SIFFSFFPKV---SNFVRASSGIPNLVACSP- 56
Query: 335 TKIKSP 318
T+I P
Sbjct: 57 TEIIIP 62
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 473 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 387
V R PSE++S++ +A L T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 473 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 387
V R PSE++S++ +A L T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,061,323
Number of Sequences: 28952
Number of extensions: 309878
Number of successful extensions: 1191
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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