Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40068
(248 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C) 95 6e-21
At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B) ribo... 95 6e-21
At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A) ribo... 95 6e-21
At3g12210.2 68416.m01524 expressed protein 31 0.14
At3g12210.1 68416.m01523 expressed protein 31 0.14
At5g04380.1 68418.m00430 S-adenosyl-L-methionine:carboxyl methyl... 27 1.3
At1g60380.1 68414.m06798 apical meristem formation protein-relat... 26 3.0
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 25 5.3
At1g67025.1 68414.m07621 hypothetical protein 25 5.3
At5g06780.1 68418.m00766 emsy N terminus domain-containing prote... 25 7.0
At3g21450.1 68416.m02706 protein kinase family protein contains ... 25 7.0
At3g12140.2 68416.m01511 emsy N terminus domain-containing prote... 25 7.0
At3g12140.1 68416.m01510 emsy N terminus domain-containing prote... 25 7.0
At5g62210.1 68418.m07811 embryo-specific protein-related contain... 25 9.2
At4g39010.1 68417.m05526 glycosyl hydrolase family 9 protein end... 25 9.2
At4g21710.1 68417.m03144 DNA-directed RNA polymerase II 135 kDa ... 25 9.2
At2g45730.1 68415.m05688 eukaryotic initiation factor 3 gamma su... 25 9.2
At2g27580.1 68415.m03342 zinc finger (AN1-like) family protein c... 25 9.2
At2g05900.1 68415.m00639 SET domain-containing protein / YDG/SRA... 25 9.2
>At4g33865.1 68417.m04805 40S ribosomal protein S29 (RPS29C)
Length = 56
Score = 95.1 bits (226), Expect = 6e-21
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = +3
Query: 45 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 206
MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR A +IGF K
Sbjct: 1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54
>At3g44010.1 68416.m04712 40S ribosomal protein S29 (RPS29B)
ribosomal protein S29, rat, PIR:S30298
Length = 56
Score = 95.1 bits (226), Expect = 6e-21
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = +3
Query: 45 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 206
MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR A +IGF K
Sbjct: 1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54
>At3g43980.1 68416.m04708 40S ribosomal protein S29 (RPS29A)
ribosomal protein S29, rat, PIR:S30298
Length = 56
Score = 95.1 bits (226), Expect = 6e-21
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = +3
Query: 45 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 206
MGH+N+W SHP++YG GSR CR C N HGLIRKYGLN CRQCFR A +IGF K
Sbjct: 1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54
>At3g12210.2 68416.m01524 expressed protein
Length = 209
Score = 30.7 bits (66), Expect = 0.14
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -2
Query: 145 YLRIK-PCLLEQDRHDRDPCPYLRG*EY-QIFAWPILR 38
+ RIK PCLL HDRDP PYL E Q+ W + R
Sbjct: 38 FYRIKLPCLL----HDRDPNPYLTTSELSQLMKWKLSR 71
>At3g12210.1 68416.m01523 expressed protein
Length = 155
Score = 30.7 bits (66), Expect = 0.14
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -2
Query: 145 YLRIK-PCLLEQDRHDRDPCPYLRG*EY-QIFAWPILR 38
+ RIK PCLL HDRDP PYL E Q+ W + R
Sbjct: 38 FYRIKLPCLL----HDRDPNPYLTTSELSQLMKWKLSR 71
>At5g04380.1 68418.m00430 S-adenosyl-L-methionine:carboxyl
methyltransferase family protein similar to
SAM:salicylic acid carboxyl methyltransferase (SAMT)
[GI:6002712][Clarkia breweri] and to SAM:benzoic acid
carboxyl methyltransferase
(BAMT)[GI:9789277][Antirrhinum majus]
Length = 385
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 69 SHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDI 194
SH + GQ SC L+ +G +I F +YAH +
Sbjct: 323 SHKAKAGQKEASCIRAVTETMLVAHFGDDIIDALFHKYAHHV 364
>At1g60380.1 68414.m06798 apical meristem formation protein-related
contains similarity to CUC1 [Arabidopsis thaliana]
gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida]
gi|1279640|emb|CAA63101
Length = 318
Score = 26.2 bits (55), Expect = 3.0
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 165 VCICSNRTCGLSHAC 121
+CI +NRTCG++ C
Sbjct: 223 ICIFANRTCGVTDKC 237
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 77 SQIRTRISVMPILLQQAWLNPQVRFEHMQTVL 172
+++R PILL +A LNP+V E M ++
Sbjct: 95 NELRLEPEEHPILLTEAPLNPKVNREKMTQIM 126
>At1g67025.1 68414.m07621 hypothetical protein
Length = 221
Score = 25.4 bits (53), Expect = 5.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 99 RSCRSCSNRHGLIRKYGLNICRQC 170
+SCR CSN HG+ ++ QC
Sbjct: 182 QSCRGCSNSHGVCGSEPVSGSFQC 205
>At5g06780.1 68418.m00766 emsy N terminus domain-containing protein
/ ENT domain-containing protein contains Pfam profile
PF03735: ENT domain
Length = 320
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 166 SASESMLMT*DSRSWTKWSRNNKFY 240
SA+E + WTKW +N FY
Sbjct: 127 SANEPAEALIGRKVWTKWPEDNSFY 151
>At3g21450.1 68416.m02706 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 270
Score = 25.0 bits (52), Expect = 7.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 95 ISVMPILLQQAWLNPQVRF 151
I MP+++++ W +PQ RF
Sbjct: 30 IKDMPVVIKREWCSPQPRF 48
>At3g12140.2 68416.m01511 emsy N terminus domain-containing protein
/ ENT domain-containing protein contains Pfam profile
PF03735: ENT domain
Length = 327
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 166 SASESMLMT*DSRSWTKWSRNNKFY 240
S +ES + WTKW +N FY
Sbjct: 128 SGNESAEALIGRKVWTKWPEDNHFY 152
>At3g12140.1 68416.m01510 emsy N terminus domain-containing protein
/ ENT domain-containing protein contains Pfam profile
PF03735: ENT domain
Length = 327
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 166 SASESMLMT*DSRSWTKWSRNNKFY 240
S +ES + WTKW +N FY
Sbjct: 128 SGNESAEALIGRKVWTKWPEDNHFY 152
>At5g62210.1 68418.m07811 embryo-specific protein-related contains
weak similarity to embryo-specific protein 3
(GI:3335171) [Arabidopsis thaliana]
Length = 223
Score = 24.6 bits (51), Expect = 9.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -2
Query: 148 PYLRIKPCLLEQDRHDRDPCPY 83
P L +P + D H+ + CPY
Sbjct: 21 PSLTFEPLISSLDLHEEESCPY 42
>At4g39010.1 68417.m05526 glycosyl hydrolase family 9 protein
endo-1,4-beta-glucanase precursor - Fragariax ananassa,
PID:g3549291
Length = 497
Score = 24.6 bits (51), Expect = 9.2
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +2
Query: 23 RNNLIS*NGPRKYLVFSPSQIRTRISVM---PILLQQAWLNPQ 142
RN+L++ YL+ S SQ+ RI V PI W P+
Sbjct: 114 RNSLVALRWSSNYLLKSVSQLPNRIFVQVGDPIADHNCWERPE 156
>At4g21710.1 68417.m03144 DNA-directed RNA polymerase II 135 kDa
polypeptide / RNA polymerase II subunit 2 (RPB135) (RPB2)
(RP140) identical to SP|P38420 DNA-directed RNA
polymerase II 135 kDa polypeptide (EC 2.7.7.6) (RNA
polymerase II subunit 2) {Arabidopsis thaliana}
Length = 1188
Score = 24.6 bits (51), Expect = 9.2
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 90 QGSRSCRSCSNRHGLIRKYGLNICRQCFRE 179
+ S CR C N+ +++ Y C+ F+E
Sbjct: 1137 KNSFECRGCKNKTDIVQVYIPYACKLLFQE 1166
>At2g45730.1 68415.m05688 eukaryotic initiation factor 3 gamma
subunit family protein contains Pfam profile PF04189:
Eukaryotic initiation factor 3, gamma subunit
Length = 446
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 132 LIRKYGLNICRQCFREYAHDIGFKKLD 212
L R + +IC F++Y IGF ++D
Sbjct: 171 LRRPFARSICEAYFKKYPARIGFLRVD 197
>At2g27580.1 68415.m03342 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 163
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = +3
Query: 108 RSCSNRHGLIRKYGL-NICRQCFREYAH 188
R C+N G N+C +CFR+ H
Sbjct: 11 RLCANNCGFFGSTATQNLCSKCFRDLQH 38
>At2g05900.1 68415.m00639 SET domain-containing protein / YDG/SRA
domain-containing protein contains Pfam profiles
PF00856: SET domain, PF05033: Pre-SET motif, PF02182:
YDG/SRA domain
Length = 312
Score = 24.6 bits (51), Expect = 9.2
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -3
Query: 162 CICSNRTCGLSHACWSRIGMTEILV 88
C C R+CG H ++ ++ LV
Sbjct: 209 CACGRRSCGSKHVFREKLSVSSSLV 233
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,397,997
Number of Sequences: 28952
Number of extensions: 99880
Number of successful extensions: 228
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,070,560
effective HSP length: 61
effective length of database: 10,304,488
effective search space used: 216394248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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