Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40059
         (844 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ...    41   0.001
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ...    41   0.001
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ...    41   0.001
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ...    41   0.001
At3g15130.1 68416.m01914 pentatricopeptide (PPR) repeat-containi...    31   1.3  
At4g16410.1 68417.m02483 expressed protein contains Pfam PF05421...    28   6.8  
At1g76160.1 68414.m08844 multi-copper oxidase type I family prot...    28   6.8  

>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
           identical to SWISS-PROT:P13905 elongation factor 1-alpha
           (EF-1-alpha) [Arabidopsis thaliana]
          Length = 449

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/34 (55%), Positives = 24/34 (70%)
 Frame = +3

Query: 720 GQEKTHLYIVVIGHATPGRSTTTGSFVLPNVGGI 821
           G+EK H+ IVVIGH   G+STTTG  +   +GGI
Sbjct: 2   GKEKFHINIVVIGHVDSGKSTTTGHLIY-KLGGI 34


>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/34 (55%), Positives = 24/34 (70%)
 Frame = +3

Query: 720 GQEKTHLYIVVIGHATPGRSTTTGSFVLPNVGGI 821
           G+EK H+ IVVIGH   G+STTTG  +   +GGI
Sbjct: 2   GKEKFHINIVVIGHVDSGKSTTTGHLIY-KLGGI 34


>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/34 (55%), Positives = 24/34 (70%)
 Frame = +3

Query: 720 GQEKTHLYIVVIGHATPGRSTTTGSFVLPNVGGI 821
           G+EK H+ IVVIGH   G+STTTG  +   +GGI
Sbjct: 2   GKEKFHINIVVIGHVDSGKSTTTGHLIY-KLGGI 34


>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/34 (55%), Positives = 24/34 (70%)
 Frame = +3

Query: 720 GQEKTHLYIVVIGHATPGRSTTTGSFVLPNVGGI 821
           G+EK H+ IVVIGH   G+STTTG  +   +GGI
Sbjct: 2   GKEKFHINIVVIGHVDSGKSTTTGHLIY-KLGGI 34


>At3g15130.1 68416.m01914 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 689

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 672 TITELEEPCHSTNHKWGQEKTHLYIVVIGHATPGRSTTTGSFV 800
           T+T L + C ST   +  ++ H ++V  G   P  +T TGS V
Sbjct: 212 TLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLV 254


>At4g16410.1 68417.m02483 expressed protein contains Pfam PF05421:
           Protein of unknown function (DUF751)
          Length = 185

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
 Frame = +1

Query: 721 ARKRLTFTLSSSGTRLP-AGPPPLG---HLSYQMWGGLA 825
           AR+RLT T SS  ++L  A PPPLG   H  Y + GG++
Sbjct: 50  ARRRLT-TKSSRNSKLERAQPPPLGLERHWRYAVVGGVS 87


>At1g76160.1 68414.m08844 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 541

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +3

Query: 741 YIVVIGHATPGRSTTTGSFVLPN-VGGIGQPYPSG 842
           Y+VV    T    TTTG F   N  GG+  P P G
Sbjct: 273 YVVVSSRFTSNVLTTTGIFRYSNSAGGVSGPIPGG 307


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,290,079
Number of Sequences: 28952
Number of extensions: 344562
Number of successful extensions: 714
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)