Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40056
(881 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 31 0.77
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 31 0.77
At3g26900.1 68416.m03366 shikimate kinase family protein similar... 31 0.77
At1g52070.1 68414.m05874 jacalin lectin family protein similar t... 30 1.8
At3g03630.1 68416.m00366 cysteine synthase, chloroplast, putativ... 30 2.4
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 29 5.4
At3g56940.1 68416.m06334 dicarboxylate diiron protein, putative ... 29 5.4
At5g02850.1 68418.m00228 hydroxyproline-rich glycoprotein family... 28 7.2
At3g43150.1 68416.m04546 hypothetical protein 28 7.2
At1g18420.1 68414.m02300 expressed protein contains Pfam profile... 28 7.2
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 24 7.4
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 31.5 bits (68), Expect = 0.77
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 288 YLSEGHLEYSAASGTNPNLERSKLMRKSFHGSAGKILTAAKVPP--PPPVRTTSQLSGTK 461
Y ++G + S+ G+N + S R S G +T +PP PPP RT S LSG
Sbjct: 287 YSNQGKM--SSFDGSNSDTSDSLEERLSHEGLRNNSITNHGLPPLKPPPGRTASVLSGKS 344
Query: 462 Y 464
+
Sbjct: 345 F 345
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 31.5 bits (68), Expect = 0.77
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 288 YLSEGHLEYSAASGTNPNLERSKLMRKSFHGSAGKILTAAKVPP--PPPVRTTSQLSGTK 461
Y ++G + S+ G+N + S R S G +T +PP PPP RT S LSG
Sbjct: 287 YSNQGKM--SSFDGSNSDTSDSLEERLSHEGLRNNSITNHGLPPLKPPPGRTASVLSGKS 344
Query: 462 Y 464
+
Sbjct: 345 F 345
>At3g26900.1 68416.m03366 shikimate kinase family protein similar to
shikimate kinase precursor GB:CAA45121 [Lycopersicon
esculentum]; contains Pfam shikimate kinase domain
PF01202
Length = 280
Score = 31.5 bits (68), Expect = 0.77
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = -2
Query: 820 GGQPKMLAGEPLQWAKANSTRSKPMVKSQSSMFGMCYARLNGGRSLSSQGFVLGES 653
G P++L PL +A +T KP++ S S+ C++R+ RSL+ Q G S
Sbjct: 14 GFVPRLL---PLLSPQARTTLCKPLLSSSSTRLISCHSRIAPSRSLADQSASTGIS 66
>At1g52070.1 68414.m05874 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767; contains Pfam profile PF01419
jacalin-like lectin domain
Length = 315
Score = 30.3 bits (65), Expect = 1.8
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Frame = +3
Query: 255 KTNDDKSPLSGYLSEGHLEYSAASGTNPNLERSKLMRKSFHGSAGKILTA--AKVPPPPP 428
KTN S + GY +G ++S G N M FHGSAGK+L + A + PP
Sbjct: 117 KTNLKTSEVIGY-PKGTTKFSLG-GVNGK------MVIGFHGSAGKVLNSIGAYLTTAPP 168
Query: 429 VRTTSQLSGTKYG---YVDHNNYNYCPEIEKTVAS 524
T SQL G G + D +NY+ +I T S
Sbjct: 169 --TKSQLVGGLTGGEPWDDGSNYDGVKKISVTYIS 201
>At3g03630.1 68416.m00366 cysteine synthase, chloroplast, putative /
O-acetylserine (thiol)-lyase, putative / O-acetylserine
sulfhydrylase, putative identical to SP|O22682 Probable
cysteine synthase, chloroplast precursor {Arabidopsis
thaliana}, similar to SP|P31300 Cysteine synthase,
chloroplast precursor {Capsicum annuum}
Length = 404
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 366 KSFHGSAGKILTAAKVPPPPPVRTTSQ 446
KS G+ K T K PPPPPV T ++
Sbjct: 61 KSSTGTKSKSKTKRKPPPPPPVTTVAE 87
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 414 PPPPPVRTTSQLSGTKYGYVDHNNYNYCPEIEKTVASLNNTEMNHNL 554
PPPPP T ++ T G H+++ P T + NT +H L
Sbjct: 157 PPPPPPTITPPVTTTTTG---HHHHRPPPPPPATTTPITNTSDHHQL 200
>At3g56940.1 68416.m06334 dicarboxylate diiron protein, putative
(Crd1) similar to leucine-containing zipper protein
At103 GP:6911864; contains Pfam profile PF05447: Copper
response defect 1 (CRD1)
Length = 409
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 396 LTAAKVPPPPPVRTTSQLSGTKYGYVDH--NNYNYCPEIEKTVASLNNTEMNHNL 554
++A+ PPPP T+ GTK + Y + E+ + L NTE+N NL
Sbjct: 37 MSASSSPPPPTTATSKSKKGTKKEIQESLLTPRFYTTDFEE-MEQLFNTEINKNL 90
>At5g02850.1 68418.m00228 hydroxyproline-rich glycoprotein family
protein
Length = 426
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 369 SFHGSAGKILTAAKVPPPPPVRTTSQLSGTK 461
+F GS L++ +PPPPP+ S S TK
Sbjct: 113 AFRGSLPSFLSSHSLPPPPPLENPSP-SSTK 142
>At3g43150.1 68416.m04546 hypothetical protein
Length = 194
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +1
Query: 112 IRRKLLMGGLIRRKNRSMPDLTEGADGNKENSNKEKRVSSVDDTDVGRRRTMIN 273
+R + + G + + +P +E +D +E+SN KRV + D DV + N
Sbjct: 127 LRARGQVSGPVNAPVQVIPSDSEDSDDEEEDSNPWKRVKNEPDVDVKNEASTSN 180
>At1g18420.1 68414.m02300 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 581
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 413 NFSSGQYFTGATMKTLAHKLTSFQVRVRPTCSRILQVPLGE 291
N SS +T+ HK S+ R+ T +LQ PLGE
Sbjct: 492 NLSSATMLPYLQSRTMIHKQPSWPSRISITPGSMLQPPLGE 532
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 23.8 bits (49), Expect(2) = 7.4
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 399 TAAKVPPPPP 428
T KVPPPPP
Sbjct: 702 TVTKVPPPPP 711
Score = 22.6 bits (46), Expect(2) = 7.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 414 PPPPPVRTTSQLSG 455
PPPPP T Q +G
Sbjct: 733 PPPPPAPPTPQSNG 746
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,069,598
Number of Sequences: 28952
Number of extensions: 457146
Number of successful extensions: 1615
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1600
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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