Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40051
         (860 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02340.1 68418.m00157 DC1 domain-containing protein contains ...    31   0.99 
At3g03570.1 68416.m00360 expressed protein similar to hypothetic...    30   2.3  

>At5g02340.1 68418.m00157 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 631

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 8/51 (15%)
 Frame = -2

Query: 463 KISGHYLIAARPG----DH---HPF-IHYSPSKCFLFCNGICNIIR*SLFT 335
           K+S H + A +P     DH   HP  + +SPSK FL CN +C +I+ S+ T
Sbjct: 184 KLSMHPVCAMKPVPSFIDHTKRHPHPLTFSPSKAFLPCN-VCGLIKESILT 233


>At3g03570.1 68416.m00360 expressed protein similar to hypothetical
           protein GB:CAB38918 [Arabidopsis thaliana]
          Length = 607

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +3

Query: 288 NKHIPVQKIYWYCIYRVNKLYRIILQIPLQNKKHFE 395
           N +IP+ ++YW  + + +K +  I  +P   +  +E
Sbjct: 8   NNNIPLSEVYWSLVNKADKKFSKIRDLPFYERSRYE 43


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,969,346
Number of Sequences: 28952
Number of extensions: 328474
Number of successful extensions: 568
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)