Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40050
         (880 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52930.1 68414.m05985 brix domain-containing protein contains...    89   4e-18
At3g15460.1 68416.m01961 brix domain-containing protein contains...    82   4e-16
At1g74540.1 68414.m08636 cytochrome P450, putative similar to cy...    31   0.77 
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf...    31   1.0  
At2g31550.1 68415.m03854 GDSL-motif lipase/hydrolase family prot...    31   1.3  
At2g31920.1 68415.m03899 expressed protein                             30   2.3  
At5g24350.1 68418.m02870 expressed protein weak similarity to ne...    29   4.1  
At3g54040.1 68416.m05975 photoassimilate-responsive protein-rela...    29   4.1  
At2g31540.1 68415.m03853 GDSL-motif lipase/hydrolase family prot...    29   5.4  
At3g12550.1 68416.m01562 XH/XS domain-containing protein / XS zi...    28   9.5  

>At1g52930.1 68414.m05985 brix domain-containing protein contains
           Pfam domain, PF04427: Brix domain
          Length = 320

 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 41/92 (44%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
 Frame = +2

Query: 215 CDERYQSSSQAFNEDIKKLMPHHKTESKME-RSKNLYVVNEISEMKNCNKCILFEGRKMR 391
           C  R     ++   +I  L+PH K +SK+E +S     +NE+ E+KN N C+ FE RK +
Sbjct: 63  CSRRISFRYRSLMLNIVSLLPHCKKDSKVEAKSSKGATLNELIELKNSNSCLFFECRKHK 122

Query: 392 DLYMWISNIPNGPSAKFLVENIYTMGELKMTG 487
           DLYMW+   PNGPS KFLV+ ++ M E+K+TG
Sbjct: 123 DLYMWMVKSPNGPSVKFLVKAVHAMEEMKLTG 154



 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 49/128 (38%), Positives = 66/128 (51%), Gaps = 12/128 (9%)
 Frame = +3

Query: 510 LLSFDPQFTKDPHYCLLKELLVQIFGVPNYHPKSQPFFDHVYTLMVLVTEFGFRNYQ--- 680
           LL+F   F KD H+ LLKE+L Q+FG+P  H KS+P+ DHV+   ++     FRNYQ   
Sbjct: 163 LLTFSSNFDKDAHWKLLKEMLTQVFGIPKEHRKSKPYHDHVFVFSIVDEHIWFRNYQISV 222

Query: 681 -------ILSGRW--VL*LK*GPRFVLNPVQIFSRIVGGCPIYGGNP*IPLGPWPNLRTG 833
                  I  G    +  ++ GPRF LNP++IF+   GG  +Y      PL   PN    
Sbjct: 223 PHNESDKIAKGGLDKMTLIEVGPRFCLNPIKIFAGSFGGPTLYEN----PLYVSPNQIRA 278

Query: 834 LIPRKSPG 857
           L  R   G
Sbjct: 279 LEKRNKAG 286


>At3g15460.1 68416.m01961 brix domain-containing protein contains
           Pfam domain, PF04427: Brix domain
          Length = 315

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
 Frame = +2

Query: 215 CDERYQSSSQAFNEDIKKLMPHHKTESKME-RSKNLYVVNEISEMKNCNKCILFEGRKMR 391
           C  R     +    ++  L+PH K +SK+E +S     +NE+ E+K  + C+ FE RK +
Sbjct: 59  CSRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHK 118

Query: 392 DLYMWISNIPNGPSAKFLVENIYTMGELKMTG 487
           DLYMW+   P GPS KFLV  ++TM ELK+TG
Sbjct: 119 DLYMWMVKSPGGPSVKFLVNAVHTMEELKLTG 150



 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 65/223 (29%), Positives = 101/223 (45%), Gaps = 14/223 (6%)
 Frame = +3

Query: 156 SSDPAPKQVKWINRQRVLVFAMRGINHRHRHLM-KILRN*CHIIRQSPKWREAKTCMLLM 332
           +S PA   V + N+++VLV   R IN R+RHLM  ++    H  + S    ++     L 
Sbjct: 40  NSKPAYASV-FRNKEKVLVTCSRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLN 98

Query: 333 KLAR*KTATNAFYLKEER*GIYICGYLIYPMDQVLNFWWKTFILWGN*K*LAL-FERI*A 509
           +L   K +++  + +  +        +  P    + F           K      +    
Sbjct: 99  ELIELKGSSSCLFFECRKHKDLYMWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRP 158

Query: 510 LLSFDPQFTKDPHYCLLKELLVQIFGVPNYHPKSQPFFDHVYTLMVLVTEFGFRNYQILS 689
           LL+F   F  D H+ LLKE+L QIFG+P  H KS+P+ DHV+   ++     FRNYQI  
Sbjct: 159 LLTFSSNFENDAHWKLLKEMLTQIFGIPEGHRKSKPYHDHVFVFSIVDDHIWFRNYQISV 218

Query: 690 GR------------WVL*LK*GPRFVLNPVQIFSRIVGGCPIY 782
                          +  ++ GPRF LNP++IF    GG  +Y
Sbjct: 219 PHNESDKIARGDLDKMTLIEVGPRFCLNPIKIFGGSFGGTTLY 261


>At1g74540.1 68414.m08636 cytochrome P450, putative similar to
           cytochrome P450 GB:O48922 [Glycine max]; contains Pfam
           profile: PF00067 cytochrome P450
          Length = 497

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 404 WISNIPNGPSAKFLVENIYTMGEL 475
           W SNIP GP  KFL+ N++ M  L
Sbjct: 23  WRSNIPPGPKPKFLLGNLHQMKPL 46


>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 883

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
 Frame = +2

Query: 164 SCTQTGEMDKQTEGTRLCDERYQSSSQAFNEDIKKLMPHHKTESKMERSKNLYV---VNE 334
           SC    + D  T      D RY S     +  + KL  HH + S++ R+ + +V   V  
Sbjct: 159 SCIVRSKSDITTSQCGDRDRRYTSPGNPCSCSVSKLSVHHSSHSEISRTSSPFVNCSVGS 218

Query: 335 IS----EMKNCNKCILFEGRKMRDLYM-WISNIPNGPSAKFLVENIYTMGELK 478
           +S     +   + C+L E     ++ +  I N+ NG   +F+V  I   G  K
Sbjct: 219 VSADSLRLNGDSDCVLRESVVNEEVEVCTIKNLDNG--KEFVVNEIQEDGTWK 269


>At2g31550.1 68415.m03854 GDSL-motif lipase/hydrolase family protein
           similar to family II lipase EXL3 (GI:15054386), EXL1
           (GI:15054382), EXL2 (GI:15054384) [Arabidopsis
           thaliana]; contains Pfam profile PF00657:
           Lipase/Acylhydrolase with GDSL-like motif
          Length = 219

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 209 RLCDERYQSSSQAFNEDIKKLMPHHKTESKMERSKNLY--VVNEISEM 346
           R C E +   S  +NE ++KL+P  + E+ +  SK LY  V N + EM
Sbjct: 103 RFCLEHHNKDSVLYNEKLQKLLP--QIEASLPGSKFLYADVYNPMMEM 148


>At2g31920.1 68415.m03899 expressed protein
          Length = 585

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 57  KAMVKVKKPSKVKQRITEPVTKDENVPLP--PVRMSSDP 167
           K+++K++ PSK     T P  +++NV  P  P+ M+S P
Sbjct: 195 KSLLKIESPSKYFNCGTSPALRNKNVVKPGSPISMASSP 233


>At5g24350.1 68418.m02870 expressed protein weak similarity to
           neuroblastoma-amplified protein [Homo sapiens]
           GI:4337460
          Length = 2376

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 631 CIPLWY**QNLGSEIIRFCLEDGCFS*NRDHDL 729
           CI LW   QNLG E++     DG +  N+D  L
Sbjct: 244 CISLWRKCQNLGLELLSTTKFDGVYCENKDDQL 276


>At3g54040.1 68416.m05975 photoassimilate-responsive protein-related
           contains weak similarity to mRNA inducible by sucrose
           and salicylic acid expressed in sugar-accumulating
           tobacco plants (GI:871487) [Nicotiana tabacum]
          Length = 183

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 629 CVYPYGISNRIWVQKLSDSVWKMGALAEIGTTICIESCPDIL 754
           CV   G+  +  V   SDS+ + G  A++ ++ C++ CP+IL
Sbjct: 79  CVSACGVDRKT-VGISSDSLMEAGFAAKLCSSACLDYCPNIL 119


>At2g31540.1 68415.m03853 GDSL-motif lipase/hydrolase family protein
           similar to family II lipases EXL3 GI:15054386, EXL1
           GI:15054382, EXL2 GI:15054384 from [Arabidopsis
           thaliana]; contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase
          Length = 360

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 209 RLCDERYQSSSQAFNEDIKKLMPHHKTESKMERSKNLY--VVNEISEM 346
           R C E +   S  +NE ++ L+P  + E+ +  SK LY  V N + EM
Sbjct: 244 RFCLEHHNKDSVLYNEKLQNLLP--QIEASLPGSKFLYADVYNPMMEM 289


>At3g12550.1 68416.m01562 XH/XS domain-containing protein / XS zinc
           finger domain-containing protein contains Pfam domains
           PF03469: XH domain, PF03468: XS domain and PF03470: XS
           zinc finger domain
          Length = 635

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 395 LYMWISNIPNGPSAKFLVENIYTMGELK 478
           LY W++N  +   A  L EN+  MG+LK
Sbjct: 217 LYAWLANADDYYRANILGENLRKMGDLK 244


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,994,327
Number of Sequences: 28952
Number of extensions: 502738
Number of successful extensions: 1265
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)