Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40042
(896 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g52140.1 68416.m05723 tetratricopeptide repeat (TPR)-containi... 43 3e-04
At5g37590.1 68418.m04528 kinesin light chain-related low similar... 38 0.007
At1g27500.1 68414.m03352 kinesin light chain-related low similar... 38 0.007
At5g53080.1 68418.m06594 kinesin light chain-related low similar... 36 0.048
At4g10840.1 68417.m01765 kinesin light chain-related low similar... 36 0.048
At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containi... 34 0.15
At4g28080.1 68417.m04027 expressed protein 33 0.19
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 33 0.19
At1g17680.2 68414.m02189 transcription factor-related low simila... 33 0.34
At1g17680.1 68414.m02188 transcription factor-related low simila... 33 0.34
At3g27960.1 68416.m03489 kinesin light chain-related low similar... 32 0.45
At1g63400.1 68414.m07170 pentatricopeptide (PPR) repeat-containi... 31 0.78
At1g12620.1 68414.m01466 pentatricopeptide (PPR) repeat-containi... 31 0.78
At1g62590.1 68414.m07061 pentatricopeptide (PPR) repeat-containi... 31 1.0
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi... 31 1.0
At1g04770.1 68414.m00473 male sterility MS5 family protein simil... 31 1.0
At4g12400.1 68417.m01960 stress-inducible protein, putative simi... 31 1.4
At3g14110.2 68416.m01783 tetratricopeptide repeat (TPR)-containi... 31 1.4
At3g14110.1 68416.m01784 tetratricopeptide repeat (TPR)-containi... 31 1.4
At5g58550.1 68418.m07333 tetratricopeptide repeat (TPR)-containi... 30 1.8
At4g08320.1 68417.m01373 tetratricopeptide repeat (TPR)-containi... 30 1.8
At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transfera... 30 1.8
At1g63150.1 68414.m07137 pentatricopeptide (PPR) repeat-containi... 30 1.8
At1g63080.1 68414.m07126 pentatricopeptide (PPR) repeat-containi... 30 2.4
At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containi... 30 2.4
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 30 2.4
At1g12300.1 68414.m01422 pentatricopeptide (PPR) repeat-containi... 30 2.4
At1g12270.1 68414.m01419 stress-inducible protein, putative simi... 30 2.4
At1g63130.1 68414.m07134 pentatricopeptide (PPR) repeat-containi... 29 3.2
At1g62930.1 68414.m07105 pentatricopeptide (PPR) repeat-containi... 29 3.2
At1g62910.1 68414.m07103 pentatricopeptide (PPR) repeat-containi... 29 3.2
At5g23010.1 68418.m02690 2-isopropylmalate synthase 3 (IMS3) ide... 29 4.2
At4g04530.1 68417.m00660 Ulp1 protease family protein (snoR29) c... 29 4.2
At3g63370.1 68416.m07133 pentatricopeptide (PPR) repeat-containi... 29 4.2
At3g11540.1 68416.m01407 gibberellin signal transduction protein... 29 4.2
At1g63330.1 68414.m07159 pentatricopeptide (PPR) repeat-containi... 29 4.2
At1g62670.1 68414.m07073 pentatricopeptide (PPR) repeat-containi... 29 5.5
At1g26370.1 68414.m03217 RNA helicase, putative similar to SP|Q1... 29 5.5
At5g02130.1 68418.m00134 expressed protein kinesin light chain -... 28 7.3
At4g32820.1 68417.m04668 expressed protein ; expression supporte... 28 7.3
At4g10840.2 68417.m01764 kinesin light chain-related low similar... 28 7.3
At3g25230.1 68416.m03152 peptidyl-prolyl cis-trans isomerase / F... 28 7.3
At5g37580.1 68418.m04527 tropomyosin-related low similarity to t... 28 9.7
At5g27110.1 68418.m03236 pentatricopeptide (PPR) repeat-containi... 28 9.7
At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family... 28 9.7
At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family... 28 9.7
At3g56030.1 68416.m06225 pentatricopeptide (PPR) repeat-containi... 28 9.7
At3g09590.1 68416.m01139 pathogenesis-related protein, putative ... 28 9.7
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 28 9.7
At1g74850.1 68414.m08674 pentatricopeptide (PPR) repeat-containi... 28 9.7
>At3g52140.1 68416.m05723 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 1403
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +3
Query: 3 SGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALSIREKTLGENH 143
SG DHPDVA +A++Y+D K A L +AL E+ LG H
Sbjct: 1139 SGPDHPDVAATFINVAMMYQDMGKMDTALRYLQEALKKNERLLGPEH 1185
Score = 38.7 bits (86), Expect = 0.005
Identities = 28/84 (33%), Positives = 35/84 (41%)
Frame = +2
Query: 254 VGRDHPDVAKXXXXXXXXXXXXXKYEEVEQYYQRALEIYESKLGPDDPNVAKTKNNLASC 433
+G DHPD A + E Q RAL + GPD P+VA T N+A
Sbjct: 1097 LGLDHPDTAHSYGNMALFYHGLNQTELALQNMGRALLLLGLSSGPDHPDVAATFINVAMM 1156
Query: 434 YLKQGKYKEAETLYKQVLTRAHER 505
Y GK A Y Q + +ER
Sbjct: 1157 YQDMGKMDTA-LRYLQEALKKNER 1179
Score = 33.9 bits (74), Expect = 0.15
Identities = 21/67 (31%), Positives = 28/67 (41%)
Frame = +2
Query: 257 GRDHPDVAKXXXXXXXXXXXXXKYEEVEQYYQRALEIYESKLGPDDPNVAKTKNNLASCY 436
G DHPDVA K + +Y Q AL+ E LGP+ A + LA +
Sbjct: 1140 GPDHPDVAATFINVAMMYQDMGKMDTALRYLQEALKKNERLLGPEHIQTAVCYHALAIAF 1199
Query: 437 LKQGKYK 457
G +K
Sbjct: 1200 NCMGAFK 1206
>At5g37590.1 68418.m04528 kinesin light chain-related low similarity
to kinesin light chain [Plectonema boryanum] GI:2645229;
contains Pfam profile PF00515: TPR Domain
Length = 225
Score = 38.3 bits (85), Expect = 0.007
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +2
Query: 323 KYEEVEQYYQRALEIYESKLGPDDPNVAKTKNNLASCYLKQGKYKEAETLYKQVLTRAHE 502
K E E+ + A++ + G DP+VA NNLA Y + ++ +AE LY + ++ E
Sbjct: 112 KLEPAERLFGSAIQEAKEGFGEKDPHVASACNNLAELYRVKKEFDKAEPLYLEAVSILEE 171
>At1g27500.1 68414.m03352 kinesin light chain-related low similarity
to kinesin light chain [Plectonema boryanum] GI:2645229;
contains Pfam profile PF00515 TPR Domain
Length = 650
Score = 38.3 bits (85), Expect = 0.007
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +3
Query: 57 YRDQNKYKEAANLLNDALSIREKTLGENHPXXXXXXXXXXXXYGKRGKYREAERVCKRAL 236
Y +++ EA +L+ + GENHP Y + GK REA+ C+ AL
Sbjct: 369 YLSLSRFDEAICAYQKSLTALKTAKGENHPAVGSVYIRLADLYNRTGKVREAKSYCENAL 428
Query: 237 CIREA 251
I E+
Sbjct: 429 RIYES 433
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +3
Query: 6 GHDHPDVATMLNILAL--VYRDQNKYKEAANLLNDALSIREKTLGENHPXXXXXXXXXXX 179
G +H +A ++ L Y + + + + + L+I++K LGEN P
Sbjct: 227 GEEHA-LAKFAGLMQLGDTYAMVGQLESSISCYTEGLNIQKKVLGENDPRVGETCRYLAE 285
Query: 180 XYGKRGKYREAERVCKRALCI 242
+ ++ EA++VC+ AL I
Sbjct: 286 ALVQALRFDEAQQVCETALSI 306
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Frame = +2
Query: 257 GRDHPDVAKXXXXXXXXXXXXXKYEEVEQYYQRALEIYES-KLGPDDPNVAKTKNNLASC 433
G +HP V K E + Y + AL IYES L +A +++
Sbjct: 394 GENHPAVGSVYIRLADLYNRTGKVREAKSYCENALRIYESHNLEISPEEIASGLTDISVI 453
Query: 434 YLKQGKYKEAETLYKQVL 487
+ ++A TL ++ L
Sbjct: 454 CESMNEVEQAITLLQKAL 471
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 329 EEVEQYYQRALEIYESKLGPDDPNVAKTKNNLASCYLKQGKYKEAETLYKQVLTRAHER 505
EE + ++ A I E + GP P +NLA Y G+ +A L V+ E+
Sbjct: 544 EEAVELFEEAKCILEQECGPYHPETLGLYSNLAGAYDAIGRLDDAIKLLGHVVGVREEK 602
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 6 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALSIREKTLGENHP 146
G HP+ + + LA Y + +A LL + +RE+ LG +P
Sbjct: 562 GPYHPETLGLYSNLAGAYDAIGRLDDAIKLLGHVVGVREEKLGTANP 608
>At5g53080.1 68418.m06594 kinesin light chain-related low similarity
to kinesin light chain from [Plectonema boryanum]
GI:2645229, [Loligo pealei] GI:403179; contains Pfam
profile PF00515: TPR Domain
Length = 564
Score = 35.5 bits (78), Expect = 0.048
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +3
Query: 81 EAANLLNDALSIREKTLGENHPXXXXXXXXXXXXYGKRGKYREAERVCKRALCIRE 248
E LL + L I E+ G+NHP Y + Y EAER+ + L I E
Sbjct: 374 EGRELLEECLLINERFKGKNHPSMATHLINLAASYSRSKNYVEAERLLRTCLNIME 429
Score = 35.1 bits (77), Expect = 0.064
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +2
Query: 323 KYEEVEQYYQRALEIYESKLGPDDPNVAKTKNNLASCYLKQGKYKEAETLYKQVLT---R 493
K+E +QRA+ I E++ G + + +A + GK +A +Y++ LT R
Sbjct: 201 KFENAILVHQRAIRILENRYGKCNTLLVTPLLGMAKSFASDGKATKAIGVYERTLTILER 260
Query: 494 AHERESEPLTVTISPSGKWL 553
ESE L V + GK L
Sbjct: 261 NRGSESEDLVVPLFSLGKLL 280
Score = 31.5 bits (68), Expect = 0.78
Identities = 19/77 (24%), Positives = 33/77 (42%)
Frame = +2
Query: 257 GRDHPDVAKXXXXXXXXXXXXXKYEEVEQYYQRALEIYESKLGPDDPNVAKTKNNLASCY 436
G++HP +A Y E E+ + L I E +G + ++ NLA
Sbjct: 391 GKNHPSMATHLINLAASYSRSKNYVEAERLLRTCLNIMEVSVGSEGQSITFPMLNLAVTL 450
Query: 437 LKQGKYKEAETLYKQVL 487
+ + +EAE + +VL
Sbjct: 451 SQLNRDEEAEQIALKVL 467
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 329 EEVEQYYQRALEIYESKLGPDDPNVAKTKNNLASCYLKQGKYKEAETLYKQVL 487
+E + + L I E G + P++A NLA+ Y + Y EAE L + L
Sbjct: 373 DEGRELLEECLLINERFKGKNHPSMATHLINLAASYSRSKNYVEAERLLRTCL 425
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 347 YQRALEIYESKLGPDDPNVAKTKNNLASCYLKQGKYKEAETLYKQVL 487
Y+R L I E G + ++ +L LK+GK EAE + ++
Sbjct: 251 YERTLTILERNRGSESEDLVVPLFSLGKLLLKEGKAAEAEIPFTSIV 297
>At4g10840.1 68417.m01765 kinesin light chain-related low similarity
to kinesin light chain [Plectonema boryanum] GI:2645229;
contains Pfam profile PF00515 TPR Domain
Length = 609
Score = 35.5 bits (78), Expect = 0.048
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +2
Query: 323 KYEEVEQYYQRALEIYESKLGPDDPNVAKTKNNLASCYLKQGKYKEAETLYKQVLTRAHE 502
K +E + ++ A I E + GP D + +NLA+ Y G+ ++A + +QVL E
Sbjct: 489 KIDEAGELFEEARGILEQERGPCDQDTLGVYSNLAATYDAMGRIEDAIEILEQVLKLREE 548
Query: 503 R 505
+
Sbjct: 549 K 549
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 102 DALSIREKTLGENHPXXXXXXXXXXXXYGKRGKYREAERVCKRALCIREA 251
+ L I+ +TLG+ P Y + ++ +AE +CK+ L I A
Sbjct: 208 EGLKIQIQTLGDTDPRVGETCRYLAEAYVQAMQFNKAEELCKKTLEIHRA 257
>At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|P46825 Kinesin light chain
(KLC) {Loligo pealeii}; contains Pfam profile PF00515:
TPR Domain
Length = 1797
Score = 33.9 bits (74), Expect = 0.15
Identities = 19/58 (32%), Positives = 24/58 (41%)
Frame = +2
Query: 254 VGRDHPDVAKXXXXXXXXXXXXXKYEEVEQYYQRALEIYESKLGPDDPNVAKTKNNLA 427
+G DHPD K E +Y +RAL + GP PN A T N+A
Sbjct: 956 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 1013
>At4g28080.1 68417.m04027 expressed protein
Length = 1660
Score = 33.5 bits (73), Expect = 0.19
Identities = 19/58 (32%), Positives = 23/58 (39%)
Frame = +2
Query: 254 VGRDHPDVAKXXXXXXXXXXXXXKYEEVEQYYQRALEIYESKLGPDDPNVAKTKNNLA 427
+G DHPD K E +Y RAL + GP PN A T N+A
Sbjct: 809 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVA 866
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 33.5 bits (73), Expect = 0.19
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +2
Query: 395 PNVAKTKNNLASCYLKQGKYKEAETLYKQVLTR 493
PNV T N L ++K+GK +EA LYK+++TR
Sbjct: 286 PNVI-TFNVLLDVFVKEGKLQEANELYKEMITR 317
>At1g17680.2 68414.m02189 transcription factor-related low
similarity to SP|P33339 Transcription factor tau 131 kDa
subunit (TFIIIC 131 kDa subunit) Saccharomyces
cerevisiae, transcription factor IIIC102 short isoform
[Homo sapiens] GI:18481637
Length = 896
Score = 32.7 bits (71), Expect = 0.34
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +2
Query: 368 YESKLGPDDPNVAKTKNNLASCYLKQGKYKEAETLYKQVLTRAHER 505
Y SK DP+ K A L GKY+EA ++Q+ R ER
Sbjct: 243 YASKAIQADPDDIPLKYEYADICLNTGKYREAAETFEQIFRRCPER 288
>At1g17680.1 68414.m02188 transcription factor-related low
similarity to SP|P33339 Transcription factor tau 131 kDa
subunit (TFIIIC 131 kDa subunit) Saccharomyces
cerevisiae, transcription factor IIIC102 short isoform
[Homo sapiens] GI:18481637
Length = 896
Score = 32.7 bits (71), Expect = 0.34
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +2
Query: 368 YESKLGPDDPNVAKTKNNLASCYLKQGKYKEAETLYKQVLTRAHER 505
Y SK DP+ K A L GKY+EA ++Q+ R ER
Sbjct: 243 YASKAIQADPDDIPLKYEYADICLNTGKYREAAETFEQIFRRCPER 288
>At3g27960.1 68416.m03489 kinesin light chain-related low similarity
to kinesin light chain [Plectonema boryanum] GI:2645229;
contains Pfam profile PF00515: TPR Domain
Length = 663
Score = 32.3 bits (70), Expect = 0.45
Identities = 21/80 (26%), Positives = 34/80 (42%)
Frame = +3
Query: 3 SGHDHPDVATMLNILALVYRDQNKYKEAANLLNDALSIREKTLGENHPXXXXXXXXXXXX 182
S + DVA + + Y ++ EA AL++ ++ GE H
Sbjct: 361 SQNHREDVAAVDCSIGDAYMSLARFDEAIFAYQKALAVFKQGKGETHSSVALVYVRLADL 420
Query: 183 YGKRGKYREAERVCKRALCI 242
Y K GK R+++ C+ AL I
Sbjct: 421 YNKIGKTRDSKSYCENALKI 440
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +3
Query: 36 LNILALVYRDQNKYKEAANLLNDALSIREKTLGENHPXXXXXXXXXXXXYGKRGKYREAE 215
LN + L + EAA+L +A +I EK G HP Y G+ +A
Sbjct: 540 LNQMGLACVQRYAINEAADLFEEAKTILEKECGPYHPDTLAVYSNLAGTYDAMGRLDDAI 599
Query: 216 RVCKRALCIRE 248
+ + + RE
Sbjct: 600 EILEYVVGTRE 610
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +2
Query: 332 EVEQYYQRALEIYESKLGPDDPNVAKTKNNLASCYLKQGKYKEAETLYKQVLTRAHER 505
E ++ A I E + GP P+ +NLA Y G+ +A + + V+ E+
Sbjct: 555 EAADLFEEAKTILEKECGPYHPDTLAVYSNLAGTYDAMGRLDDAIEILEYVVGTREEK 612
>At1g63400.1 68414.m07170 pentatricopeptide (PPR) repeat-containing
protein contains multiple PPR-repeats Pfam profile:
PF01535
Length = 577
Score = 31.5 bits (68), Expect = 0.78
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +2
Query: 392 DPNVAKTKNNLASCYLKQGKYKEAETLYKQVLTRA 496
+PNV T N L ++K+GK EAE LY +++ R+
Sbjct: 327 NPNVV-TFNALIDAFVKEGKLVEAEKLYDEMIKRS 360
>At1g12620.1 68414.m01466 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 621
Score = 31.5 bits (68), Expect = 0.78
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +2
Query: 422 LASCYLKQGKYKEAETLYKQVLTR 493
L C++K+GK +EAE L+K+++ R
Sbjct: 323 LIDCFVKEGKLREAEELHKEMIQR 346
>At1g62590.1 68414.m07061 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 634
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 392 DPNVAKTKNNLASCYLKQGKYKEAETLYKQVLTRA 496
+PN+ T N L ++K+GK+ EAE LY ++ R+
Sbjct: 327 NPNLV-TFNALIDAFVKEGKFVEAEKLYDDMIKRS 360
>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
protein ESTs gb|F20110 and gb|F20109 come from this gene;
contains Pfam profile PF00515: TPR Domain
Length = 1558
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = +2
Query: 254 VGRDHPDVAKXXXXXXXXXXXXXKYEEVEQYYQRALEIYESKLGPDDPNVAKTKNNLA 427
+G DHPD K +E +Y RAL + G PN A T N+A
Sbjct: 874 LGLDHPDTMKSYGDLSVFYYRLQHFELALKYVNRALFLLHFTCGLSHPNTAATYINVA 931
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/77 (25%), Positives = 31/77 (40%)
Frame = +3
Query: 6 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALSIREKTLGENHPXXXXXXXXXXXXY 185
G H + A ++LA+V + +A AL I E+ LG +HP Y
Sbjct: 833 GPYHRNTACAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLSVFY 892
Query: 186 GKRGKYREAERVCKRAL 236
+ + A + RAL
Sbjct: 893 YRLQHFELALKYVNRAL 909
>At1g04770.1 68414.m00473 male sterility MS5 family protein similar
to male sterility MS5 [Arabidopsis thaliana] GI:3859112;
contains Pfam profile PF00515 TPR Domain
Length = 303
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 419 NLASCYLKQGKYKEAET-LYKQVLTRAHERESEP 517
NL +C +KQGK+ EA + L++ VL E +P
Sbjct: 198 NLCTCLIKQGKHDEARSILFRDVLMENKEGSGDP 231
>At4g12400.1 68417.m01960 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 530
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +2
Query: 347 YQRALEIYESKLGPDDPNVAKTKNNLASCYLKQGKYKEAETLYKQVLTRAHERESE 514
+ RA+E Y + DD +++ N A+ YL+ GKY+E + + R E S+
Sbjct: 246 FGRAVEHYTKAMELDDEDISYLTNR-AAVYLEMGKYEECIEDCDKAVERGRELRSD 300
>At3g14110.2 68416.m01783 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 232
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +2
Query: 329 EEVEQYYQRALEIYESKLGPDDPNVAKTKNNLASCYLKQGKYKEAETLYKQVLTRAHERE 508
E+ ++ ALE+ +S P + K L + +QGKY+EA + VL +RE
Sbjct: 136 EKAYTEFKIALELAQSLKDPTEEK--KAARGLGASLQRQGKYREAIQYHSMVLA-ISKRE 192
Query: 509 SEPLTVT 529
SE +T
Sbjct: 193 SEDSGIT 199
>At3g14110.1 68416.m01784 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 316
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = +2
Query: 329 EEVEQYYQRALEIYESKLGPDDPNVAKTKNNLASCYLKQGKYKEAETLYKQVLTRAHERE 508
E+ ++ ALE+ +S P + K L + +QGKY+EA + VL +RE
Sbjct: 220 EKAYTEFKIALELAQSLKDPTEEK--KAARGLGASLQRQGKYREAIQYHSMVLA-ISKRE 276
Query: 509 SEPLTVT 529
SE +T
Sbjct: 277 SEDSGIT 283
>At5g58550.1 68418.m07333 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 925
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 416 NNLASCYLKQGKYKEAETLYKQVLTRAHERESEPL 520
NNL S Y+ G +AET YK + H R + L
Sbjct: 742 NNLGSIYINLGMLDQAETAYKNAIEIKHIRARQGL 776
>At4g08320.1 68417.m01373 tetratricopeptide repeat (TPR)-containing
protein glutamine-rich tetratricopeptide repeat (TPR)
containing protein (SGT) - Rattus
norvegicus,PID:e1285298 (SP|O70593); contains Pfam
profile PF00515 TPR Domain
Length = 426
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 392 DPNVAKTKNNLASCYLKQGKYKEA-ETLYKQVLTRAHERES 511
DPN +K + L Y QGKY EA E +K+ L ES
Sbjct: 239 DPNYSKAYSRLGLAYYAQGKYAEAIEKGFKKALLLDPHNES 279
>At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transferase,
putative similar to O-GlcNAc transferase, Homo sapiens
[SP|O15294], Rattus norvegicus [SP|P56558]; contains
Pfam profile PF00515: TPR Domain; identical to cDNA
GI:18139886
Length = 977
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 395 PNVAKTKNNLASCYLKQGKYKEAETLYKQVLT 490
PN A +NLAS Y+++G+ EA +Q L+
Sbjct: 152 PNFADAWSNLASAYMRKGRLSEATQCCQQALS 183
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 395 PNVAKTKNNLASCYLKQGKYKEAETLYKQVLTR 493
PN A N+AS Y +QG+ A YKQ L+R
Sbjct: 288 PNSAMAFGNIASIYYEQGQLDLAIRHYKQALSR 320
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 416 NNLASCYLKQGKYKEAETLYKQVL 487
NNLA Y +QG Y +A + Y +VL
Sbjct: 397 NNLAIIYKQQGNYSDAISCYNEVL 420
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 395 PNVAKTKNNLASCYLKQGKYKEAETLYKQVL 487
P +A+ NLAS Y G + A T YKQ L
Sbjct: 458 PTMAEAHANLASAYKDSGHVEAAITSYKQAL 488
>At1g63150.1 68414.m07137 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 629
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = +2
Query: 392 DPNVAKTKNNLASCYLKQGKYKEAETLYKQVLTRAHERESEPLTVT 529
+PNV T N L + K+GK EAE L+++++ +R +P T+T
Sbjct: 325 NPNVV-TFNALIDAFFKEGKLVEAEKLHEEMI----QRSIDPDTIT 365
>At1g63080.1 68414.m07126 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 614
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 392 DPNVAKTKNNLASCYLKQGKYKEAETLYKQVLTRA 496
+PNV T N+L + K+GK EAE L+ +++ R+
Sbjct: 307 NPNVV-TFNSLIDAFAKEGKLIEAEKLFDEMIQRS 340
>At1g62860.1 68414.m07098 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 534
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +2
Query: 392 DPNVAKTKNNLASCYLKQGKYKEAETLYKQVLTRAHERESEPLTVTIS 535
DP+V T + L + ++K+GK AE LY+++L R P T+T S
Sbjct: 147 DPDVV-TFSALINAFVKEGKVSGAEELYREML----RRNIFPTTITYS 189
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -3
Query: 780 RVPSFESCHLFRGRKAQSFE--PYRRHRNLPLAPVQRAPVLQRRGHCRRVHLGGIVPAS 610
+VPS + G + F P ++ LP+ PVQ A Q H RRV++GG+ P +
Sbjct: 209 QVPSVPTTATIPGMFSNMFPMVPGQQLGALPVLPVQ-AMTQQATRHARRVYVGGLPPTA 266
>At1g12300.1 68414.m01422 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 637
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = +2
Query: 392 DPNVAKTKNNLASCYLKQGKYKEAETLYKQVLTR 493
+PNV T + L ++K+GK +EAE L+K+++ R
Sbjct: 330 NPNVV-TFSVLIDSFVKEGKLREAEELHKEMIHR 362
>At1g12270.1 68414.m01419 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 572
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +2
Query: 347 YQRALEIYESKLGPDDPNVAKTKNNLASCYLKQGKYKEAETLYKQVLTRAHERESE 514
++ A++ Y + + DD +++ N A+ YL+ GKY E + + R E S+
Sbjct: 260 FETAIQHYSTAIEIDDEDISYLTNR-AAVYLEMGKYNECIEDCNKAVERGRELRSD 314
>At1g63130.1 68414.m07134 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 630
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 392 DPNVAKTKNNLASCYLKQGKYKEAETLYKQVLTRA 496
+PNV T + L ++K+GK EAE LY +++ R+
Sbjct: 323 NPNVV-TFSALIDAFVKEGKLVEAEKLYDEMIKRS 356
>At1g62930.1 68414.m07105 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 659
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 392 DPNVAKTKNNLASCYLKQGKYKEAETLYKQVLTRA 496
+PNV T + L ++K+GK EAE LY +++ R+
Sbjct: 322 NPNVV-TFSALIDAFVKEGKLVEAEKLYDEMIKRS 355
>At1g62910.1 68414.m07103 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1133
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 392 DPNVAKTKNNLASCYLKQGKYKEAETLYKQVLTRA 496
+PNV T + L ++K+GK EAE LY +++ R+
Sbjct: 325 NPNVV-TFSALIDAFVKEGKLVEAEKLYDEMIKRS 358
>At5g23010.1 68418.m02690 2-isopropylmalate synthase 3 (IMS3)
identical to 2-isopropylmalate synthase (IMS3)
[Arabidopsis thaliana] GI:15983745; identical to cDNA
2-isopropylmalate synthase (IMS3) GI:15983744
Length = 506
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +3
Query: 624 CRQGGLSDSDHDAEELGRAVPAPRANYDAADTVRRTGPFGPGKDGT-IQTREPGLD 788
C GG SD D + LG A+ A DTV P G+ T ++ PG+D
Sbjct: 230 CEDGGRSDKDFLCKILGEAIKAGVTVVTIGDTVGINMPHEYGELVTYLKANTPGID 285
>At4g04530.1 68417.m00660 Ulp1 protease family protein (snoR29)
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain; snoR29 gene for small
nucleolar RNA GI:15706258
Length = 917
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -1
Query: 683 YSAPQFFSVVVTV--GESTLAALCQPP*SPYGAFSFCKCLFSSR 558
YS P++ +V + G L +C P SP+ F KC FS +
Sbjct: 79 YSKPKYLLYLVDILDGTKELNYICAPCFSPFFQFEVRKCSFSGK 122
>At3g63370.1 68416.m07133 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1017
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 410 TKNNLASCYLKQGKYKEAETLYKQVLTRAHERESEPLTVTISPSGK 547
T N+L Y++ YKEA + ++ H+ + +T I+ SG+
Sbjct: 316 TWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGR 361
>At3g11540.1 68416.m01407 gibberellin signal transduction protein
(SPINDLY) identical to spindly GB:AAC49446 (GI:1589778)
[Arabidopsis thaliana]; contains Pfam profile PF00515
TPR Domain
Length = 914
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 353 RALEIYESKLGPDDPNVAKTKNNLASCYLKQGKYKEAETLYKQVL 487
+A+E Y+ L PN A++ NNL Y QGK A ++ ++ +
Sbjct: 347 KAVECYQMALSIK-PNFAQSLNNLGVVYTVQGKMDAAASMIEKAI 390
>At1g63330.1 68414.m07159 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 558
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 392 DPNVAKTKNNLASCYLKQGKYKEAETLYKQVLTRA 496
+PN+ T N L ++K+GK+ EAE L+ ++ R+
Sbjct: 251 NPNLV-TFNALIDAFVKEGKFVEAEKLHDDMIKRS 284
>At1g62670.1 68414.m07073 pentatricopeptide (PPR) repeat-containing
protein contains multiple PPR repeats Pfam Profile:
PF01535
Length = 630
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 362 EIYESKLGPDDPNVAKTKNNLASCYLKQGKYKEAETLYKQVLTRA 496
++ E K+ PD T + L ++K+GK EAE LY +++ R+
Sbjct: 316 DMIERKINPD----VFTFSALIDAFVKEGKLVEAEKLYDEMVKRS 356
>At1g26370.1 68414.m03217 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 717
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 738 KAQSFEPYRRHRNLPLAPVQRAPVLQRRGHCRR 640
KA+S++P + +L + P +A LQR G R
Sbjct: 379 KARSYDPSKGMESLDVVPASKAQTLQRSGRAGR 411
>At5g02130.1 68418.m00134 expressed protein kinesin light chain -
Plectonema boryanum, EMBL:U78597
Length = 420
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +3
Query: 84 AANLLNDALSIREKTLGENHPXXXXXXXXXXXXYGKRGKYREAERVCKRALCIREAV 254
A L DAL+ E+ G+NHP YG + K + + + R+A+
Sbjct: 279 AEKTLTDALTKTEEHYGDNHPKVGVILTAVALMYGNKAKQERSSSILIQEGLYRKAL 335
>At4g32820.1 68417.m04668 expressed protein ; expression supported
by MPSS
Length = 1817
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 753 LFRGRKAQSFEPYRRHRNL-PLAPVQRAPVLQRRGHCRRV 637
+ KA++ E Y R +L + APVL +R HCRRV
Sbjct: 554 ILEDNKAKALEEYLRCLSLLGREGIGEAPVLIQRPHCRRV 593
>At4g10840.2 68417.m01764 kinesin light chain-related low similarity
to kinesin light chain [Plectonema boryanum] GI:2645229;
contains Pfam profile PF00515 TPR Domain
Length = 531
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 102 DALSIREKTLGENHPXXXXXXXXXXXXYGKRGKYREAERVCKRALCIREA 251
+ L I+ +TLG+ P Y + ++ +AE +CK+ L I A
Sbjct: 208 EGLKIQIQTLGDTDPRVGETCRYLAEAYVQAMQFNKAEELCKKTLEIHRA 257
>At3g25230.1 68416.m03152 peptidyl-prolyl cis-trans isomerase /
FK506-binding protein (ROF1) identical to rotamase FKBP
(ROF1) GB:U49453 [Arabidopsis thaliana] (Mol. Gen.
Genet. 252 (5), 510-517 (1996))
Length = 551
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = +2
Query: 323 KYEEVEQYYQRALEI--YESKLGPDDPNVAKTKN-----NLASCYLKQGKYKEAETLYKQ 481
KY + Y++A++ Y++ ++ AK N A+C LK YK+AE L +
Sbjct: 415 KYSLASKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTK 474
Query: 482 VL 487
VL
Sbjct: 475 VL 476
>At5g37580.1 68418.m04527 tropomyosin-related low similarity to
tropomyosin gene 1, isoform 9D, D.melanogaster,
EMBL:DMTRO13 (GI:158696)
Length = 239
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +3
Query: 6 GHDHPDVATMLNILALVYRDQNKYKEAANLLNDALSIREKTLGENH 143
G + + T LAL R K EA L L+ R+K L E H
Sbjct: 7 GWNSMEAITAAEALALTLRLSGKLGEALELFEKCLNARKKLLPEGH 52
>At5g27110.1 68418.m03236 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 691
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +2
Query: 416 NNLASCYLKQGKYKEAETLYKQVLTRAHERESEPLTVTISPSGKWL 553
N + SC+ + G+ ++A L+ ++ + E S LTV IS + L
Sbjct: 177 NTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLL 222
>At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family
protein
Length = 438
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 561 RGEQALAEGERPVRRLRRLAQCRQGGLSDSDHDAEELGRAVPAPRANYDAAD 716
R +Q LA+ ++ + +L+ L Q S S H + + VP P+ + + +D
Sbjct: 99 RDKQELADTQKELAKLQ-LVQKESSSSSHSQHGEDRVATPVPEPKKSENTSD 149
>At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family
protein
Length = 496
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 561 RGEQALAEGERPVRRLRRLAQCRQGGLSDSDHDAEELGRAVPAPRANYDAAD 716
R +Q LA+ ++ + +L+ L Q S S H + + VP P+ + + +D
Sbjct: 157 RDKQELADTQKELAKLQ-LVQKESSSSSHSQHGEDRVATPVPEPKKSENTSD 207
>At3g56030.1 68416.m06225 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 336
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 329 EEVEQ-YYQRALEIYESKLGPDDPNVAKTKNNLASCYLKQGKYKEAETLYKQVLTR 493
E VE YY ++E + G D + +LAS +K+ ++KEA+ + K++ R
Sbjct: 262 EMVESGYYALSVEFVMAYAGKDKRLDEENLGSLASKLIKRKRFKEAKMVLKEMSVR 317
>At3g09590.1 68416.m01139 pathogenesis-related protein, putative
similar to SP|Q05968 Pathogenesis-related protein 1
precursor {Hordeum vulgare}; contains Pfam profile
PF00188: SCP-like extracellular protein
Length = 186
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +1
Query: 430 LLSQTGQIQGSRDSLQAGVDAGS*TRIGTIDGDN---KPIWQVAEEREENKHLQKENAPY 600
L+++ + + SR+ LQA DA + + T+ D + + A++R+ + + PY
Sbjct: 40 LVNRARRAKLSREFLQAHNDARVSSGVPTLGWDRDLARFADKWAKQRKSDCSMIHSGGPY 99
Query: 601 GDYGGWHNAAKVDSPTVTTT 660
G+ WH K SP T
Sbjct: 100 GENIFWHRRKKTWSPEKVVT 119
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 325 VRGGGAVLPARARDLREQARPRRPQRCQDQEQPR 426
+R G R DLRE+ R R QR +D+E+ R
Sbjct: 341 LRKGDRASYLREFDLREEERRREDQRARDKERER 374
>At1g74850.1 68414.m08674 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 862
Score = 27.9 bits (59), Expect = 9.7
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = +2
Query: 323 KYEEVEQYYQRALEIYESKLGPDDPNVAKTKNNLASCYLKQGKYKEAETLYKQVLTRAHE 502
+Y++V Q + LE+ S PD A T N L + + G +KE TL+ ++ E
Sbjct: 367 RYDDVRQLF---LEMKSSNTDPD----AATYNILIEVFGEGGYFKEVVTLFHDMVEENIE 419
Query: 503 RESEPLTVTISPSGK 547
+ E I GK
Sbjct: 420 PDMETYEGIIFACGK 434
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,321,332
Number of Sequences: 28952
Number of extensions: 318478
Number of successful extensions: 1277
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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