Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40039
(881 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 159 2e-39
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 159 3e-39
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 158 5e-39
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 157 7e-39
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 157 7e-39
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 156 2e-38
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 156 2e-38
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 156 2e-38
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 154 6e-38
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 64 2e-10
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 62 6e-10
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 62 6e-10
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 62 6e-10
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 62 6e-10
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 62 6e-10
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 58 8e-09
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 36 0.027
At5g61700.1 68418.m07741 ABC transporter family protein ABC fami... 28 9.5
At5g60120.1 68418.m07537 AP2 domain-containing transcription fac... 28 9.5
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 159 bits (387), Expect = 2e-39
Identities = 70/84 (83%), Positives = 80/84 (95%)
Frame = +2
Query: 2 DAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVC 181
D+KNMM A DPRHGRYLT +AIFRG+MS KEVDEQ+LNIQNKNSSYFVEWIPNNVK++VC
Sbjct: 296 DSKNMMCAADPRHGRYLTASAIFRGQMSTKEVDEQILNIQNKNSSYFVEWIPNNVKSSVC 355
Query: 182 DIPPRGLKMAATFIGNSTAIQELF 253
DIPP+GLKMAATF+GNST+IQE+F
Sbjct: 356 DIPPKGLKMAATFVGNSTSIQEMF 379
Score = 101 bits (242), Expect = 6e-22
Identities = 44/47 (93%), Positives = 47/47 (100%)
Frame = +1
Query: 253 QRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 393
+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQY
Sbjct: 380 RRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQY 426
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 159 bits (385), Expect = 3e-39
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = +2
Query: 2 DAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVC 181
DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQMLN+QNKNSSYFVEWIPNNVK+ VC
Sbjct: 295 DAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVC 354
Query: 182 DIPPRGLKMAATFIGNSTAIQELF 253
DIPP GLKMA+TFIGNST+IQE+F
Sbjct: 355 DIPPTGLKMASTFIGNSTSIQEMF 378
Score = 102 bits (245), Expect = 3e-22
Identities = 45/47 (95%), Positives = 47/47 (100%)
Frame = +1
Query: 253 QRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 393
+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 379 RRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 158 bits (383), Expect = 5e-39
Identities = 69/84 (82%), Positives = 78/84 (92%)
Frame = +2
Query: 2 DAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVC 181
DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+N+QNKNSSYFVEWIPNNVK+ VC
Sbjct: 295 DAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVC 354
Query: 182 DIPPRGLKMAATFIGNSTAIQELF 253
DIPP GLKMA+TFIGNST+IQE+F
Sbjct: 355 DIPPTGLKMASTFIGNSTSIQEMF 378
Score = 102 bits (245), Expect = 3e-22
Identities = 45/47 (95%), Positives = 47/47 (100%)
Frame = +1
Query: 253 QRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 393
+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 379 RRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 157 bits (382), Expect = 7e-39
Identities = 69/84 (82%), Positives = 78/84 (92%)
Frame = +2
Query: 2 DAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVC 181
D+KNMM A DPRHGRYLT +A+FRG+MS KEVDEQMLN+QNKNSSYFVEWIPNNVK+ VC
Sbjct: 295 DSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVC 354
Query: 182 DIPPRGLKMAATFIGNSTAIQELF 253
DIPP GLKMA+TFIGNST+IQE+F
Sbjct: 355 DIPPTGLKMASTFIGNSTSIQEMF 378
Score = 102 bits (245), Expect = 3e-22
Identities = 45/47 (95%), Positives = 47/47 (100%)
Frame = +1
Query: 253 QRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 393
+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 379 RRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 157 bits (382), Expect = 7e-39
Identities = 69/84 (82%), Positives = 78/84 (92%)
Frame = +2
Query: 2 DAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVC 181
D+KNMM A DPRHGRYLT +A+FRG+MS KEVDEQMLN+QNKNSSYFVEWIPNNVK+ VC
Sbjct: 295 DSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVC 354
Query: 182 DIPPRGLKMAATFIGNSTAIQELF 253
DIPP GLKMA+TFIGNST+IQE+F
Sbjct: 355 DIPPTGLKMASTFIGNSTSIQEMF 378
Score = 102 bits (245), Expect = 3e-22
Identities = 45/47 (95%), Positives = 47/47 (100%)
Frame = +1
Query: 253 QRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 393
+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 379 RRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 156 bits (379), Expect = 2e-38
Identities = 68/84 (80%), Positives = 79/84 (94%)
Frame = +2
Query: 2 DAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVC 181
DAKNMM A DPRHGRYLT +A+FRG++S KEVDEQM+NIQNKNSSYFVEWIPNNVK++VC
Sbjct: 295 DAKNMMCAADPRHGRYLTASAVFRGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSVC 354
Query: 182 DIPPRGLKMAATFIGNSTAIQELF 253
DI P+GLKMA+TFIGNST+IQE+F
Sbjct: 355 DIAPKGLKMASTFIGNSTSIQEMF 378
Score = 101 bits (242), Expect = 6e-22
Identities = 44/47 (93%), Positives = 47/47 (100%)
Frame = +1
Query: 253 QRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 393
+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQY
Sbjct: 379 RRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQY 425
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 156 bits (379), Expect = 2e-38
Identities = 67/84 (79%), Positives = 79/84 (94%)
Frame = +2
Query: 2 DAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVC 181
DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQ+LN+QNKNSSYFVEWIPNNVK++VC
Sbjct: 296 DAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVC 355
Query: 182 DIPPRGLKMAATFIGNSTAIQELF 253
DIPP G+KMA+TF+GNST+IQE+F
Sbjct: 356 DIPPTGIKMASTFVGNSTSIQEMF 379
Score = 102 bits (245), Expect = 3e-22
Identities = 45/47 (95%), Positives = 47/47 (100%)
Frame = +1
Query: 253 QRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 393
+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 380 RRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 426
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 156 bits (378), Expect = 2e-38
Identities = 68/84 (80%), Positives = 78/84 (92%)
Frame = +2
Query: 2 DAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVC 181
DAKNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+N+QNKNSSYFVEWIPNNVK++VC
Sbjct: 295 DAKNMMCAADPRHGRYLTASAVFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVC 354
Query: 182 DIPPRGLKMAATFIGNSTAIQELF 253
DI P GLKMA+TFIGNST+IQE+F
Sbjct: 355 DIAPTGLKMASTFIGNSTSIQEMF 378
Score = 101 bits (242), Expect = 6e-22
Identities = 44/47 (93%), Positives = 47/47 (100%)
Frame = +1
Query: 253 QRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 393
+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQY
Sbjct: 379 RRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQY 425
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 154 bits (374), Expect = 6e-38
Identities = 67/84 (79%), Positives = 78/84 (92%)
Frame = +2
Query: 2 DAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVC 181
D+KNMM A DPRHGRYLT +A+FRG+MS KEVDEQM+N+QNKNSSYFVEWIPNNVK++VC
Sbjct: 295 DSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVC 354
Query: 182 DIPPRGLKMAATFIGNSTAIQELF 253
DI PRGL MA+TFIGNST+IQE+F
Sbjct: 355 DIAPRGLSMASTFIGNSTSIQEMF 378
Score = 102 bits (245), Expect = 3e-22
Identities = 45/47 (95%), Positives = 47/47 (100%)
Frame = +1
Query: 253 QRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 393
+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 379 RRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 63.7 bits (148), Expect = 2e-10
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Frame = +2
Query: 2 DAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVC 181
+ NMMA CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K +
Sbjct: 297 EPSNMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGIN 356
Query: 182 DIPP--------RGLKMAATFIGNSTAIQELFS 256
PP ++ A I N+TA+ E+FS
Sbjct: 357 YQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFS 389
Score = 53.6 bits (123), Expect = 2e-07
Identities = 20/45 (44%), Positives = 32/45 (71%)
Frame = +1
Query: 256 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 390 RIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 61.7 bits (143), Expect = 6e-10
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 190
+MMA CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + P
Sbjct: 300 SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQP 359
Query: 191 P--------RGLKMAATFIGNSTAIQELFS 256
P ++ A I N+TA+ E+FS
Sbjct: 360 PTVVPGGDLAKVQRAVCMISNNTAVAEVFS 389
Score = 53.6 bits (123), Expect = 2e-07
Identities = 20/45 (44%), Positives = 32/45 (71%)
Frame = +1
Query: 256 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 390 RIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 61.7 bits (143), Expect = 6e-10
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 190
+MMA CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + P
Sbjct: 300 SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQP 359
Query: 191 P--------RGLKMAATFIGNSTAIQELFS 256
P ++ A I N+TA+ E+FS
Sbjct: 360 PTVVPGGDLAKVQRAVCMISNNTAVAEVFS 389
Score = 53.6 bits (123), Expect = 2e-07
Identities = 20/45 (44%), Positives = 32/45 (71%)
Frame = +1
Query: 256 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 390 RIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 61.7 bits (143), Expect = 6e-10
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 190
+MMA CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + P
Sbjct: 300 SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQP 359
Query: 191 P--------RGLKMAATFIGNSTAIQELFS 256
P ++ A I NST++ E+FS
Sbjct: 360 PTVVPGGDLAKVQRAVCMISNSTSVAEVFS 389
Score = 53.6 bits (123), Expect = 2e-07
Identities = 20/45 (44%), Positives = 32/45 (71%)
Frame = +1
Query: 256 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 390 RIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 61.7 bits (143), Expect = 6e-10
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 190
+MMA CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + P
Sbjct: 300 SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQP 359
Query: 191 P--------RGLKMAATFIGNSTAIQELFS 256
P ++ A I NST++ E+FS
Sbjct: 360 PTVVPGGDLAKVQRAVCMISNSTSVAEVFS 389
Score = 53.6 bits (123), Expect = 2e-07
Identities = 20/45 (44%), Positives = 32/45 (71%)
Frame = +1
Query: 256 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 390 RIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 61.7 bits (143), Expect = 6e-10
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 190
+MMA CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + P
Sbjct: 300 SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQP 359
Query: 191 P--------RGLKMAATFIGNSTAIQELFS 256
P ++ A I NST++ E+FS
Sbjct: 360 PTVVPGGDLAKVQRAVCMISNSTSVAEVFS 389
Score = 53.6 bits (123), Expect = 2e-07
Identities = 20/45 (44%), Positives = 32/45 (71%)
Frame = +1
Query: 256 RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 390
RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 390 RIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 58.0 bits (134), Expect = 8e-09
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Frame = +2
Query: 11 NMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP 190
+MMA CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + P
Sbjct: 300 SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQP 359
Query: 191 P--------RGLKMAATFIGNSTAIQELFSASR 265
P ++ A I NST++ E ++ R
Sbjct: 360 PTVVPGGDLAKVQRAVCMISNSTSVAEKENSQR 392
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 36.3 bits (80), Expect = 0.027
Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = +2
Query: 44 RYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP---RGLKMAA 214
+Y+++ I +G + +V E + I+ + F+EW P +++ A+ P +++
Sbjct: 318 KYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSKKSPYVQTAHRVSG 377
Query: 215 TFIGNSTAIQELFS 256
+ + T+I+ LFS
Sbjct: 378 LMLASHTSIRHLFS 391
>At5g61700.1 68418.m07741 ABC transporter family protein ABC family
transporter, Entamoeba histolytica, EMBL:EH058
Length = 888
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = -1
Query: 728 KVSILDQPLQISDLSSQRAWWNIKECIEQIVFVQIICHNREFSRAVC*KL 579
KV LD+P D +S++ WN+ + +Q + + H+ E + +C +L
Sbjct: 724 KVVYLDEPSTGLDPASRKNLWNVIKRAKQNTAIILTTHSMEEAEFLCDRL 773
>At5g60120.1 68418.m07537 AP2 domain-containing transcription
factor, putative Similar to Floral homeotic protein
APETALA2 protein (SP:P47927) [Arabidopsis thaliana];
homolog HAP2, Hyacinthus orientalis, EMBL:AF134116
Length = 485
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +2
Query: 158 NNVKTAVCDIPPRGLKMAATFIGNSTAIQELFSASRNSSPLCSGARLSCIGTPARAW 328
N++ A CD P LK + + N A+ F + +P S PAR W
Sbjct: 349 NHMAAAACDTPFNFLKRGSDHLNNRHALPSAFFSPMERTPEKGLMLRSHQSFPARTW 405
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,355,104
Number of Sequences: 28952
Number of extensions: 332011
Number of successful extensions: 910
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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