Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30026X
(380 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19006.1 68417.m02801 26S proteasome regulatory subunit, puta... 71 3e-13
At5g45620.2 68418.m05607 26S proteasome regulatory subunit, puta... 67 3e-12
At5g45620.1 68418.m05608 26S proteasome regulatory subunit, puta... 67 3e-12
At2g20800.1 68415.m02446 pyridine nucleotide-disulphide oxidored... 28 1.8
At2g26900.1 68415.m03227 bile acid:sodium symporter family prote... 27 3.2
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R... 27 3.2
At1g03860.3 68414.m00370 prohibitin, putative similar to SP|P241... 27 3.2
At1g03860.2 68414.m00368 prohibitin, putative similar to SP|P241... 27 3.2
At1g03860.1 68414.m00369 prohibitin, putative similar to SP|P241... 27 3.2
At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containi... 26 7.4
At5g50020.1 68418.m06195 zinc finger (DHHC type) family protein ... 26 9.7
At5g24930.1 68418.m02952 zinc finger (B-box type) family protein... 26 9.7
At3g03380.1 68416.m00336 DegP protease, putative contains simila... 26 9.7
>At4g19006.1 68417.m02801 26S proteasome regulatory subunit,
putative (RPN9) similar to 26S proteasome subunit p40.5
[Homo sapiens] gi|3618343|dbj|BAA33214
Length = 386
Score = 70.5 bits (165), Expect = 3e-13
Identities = 35/74 (47%), Positives = 46/74 (62%)
Frame = +1
Query: 1 LTLKLQEFVKNPALQRGDNLIQLYNNFLTTFESKINPLSLVEIIAHIVEQYVNKRDAVTF 180
LTLKL++F+ Q GD LIQLYNNF+T FE++IN L L + QY K AV++
Sbjct: 36 LTLKLEQFIALSVFQAGDALIQLYNNFITDFETRINLLKLAHFAVVVSRQYPEKEAAVSY 95
Query: 181 LEKVETKVKMNDEA 222
LE V K+K E+
Sbjct: 96 LEGVIEKLKATKES 109
>At5g45620.2 68418.m05607 26S proteasome regulatory subunit,
putative (RPN9) contains similarity to 26S proteasome
subunit p40.5 GI:3618343 from [Homo sapiens]
Length = 350
Score = 67.3 bits (157), Expect = 3e-12
Identities = 33/73 (45%), Positives = 44/73 (60%)
Frame = +1
Query: 1 LTLKLQEFVKNPALQRGDNLIQLYNNFLTTFESKINPLSLVEIIAHIVEQYVNKRDAVTF 180
LTLKL++F+ Q GD LIQ Y+NF+T FE+KIN L L + QY K AV++
Sbjct: 36 LTLKLEQFIALAVFQAGDALIQFYHNFITDFETKINLLKLAHFAVVVSRQYSEKEAAVSY 95
Query: 181 LEKVETKVKMNDE 219
LE V K++ E
Sbjct: 96 LESVIEKLRATKE 108
>At5g45620.1 68418.m05608 26S proteasome regulatory subunit,
putative (RPN9) contains similarity to 26S proteasome
subunit p40.5 GI:3618343 from [Homo sapiens]
Length = 386
Score = 67.3 bits (157), Expect = 3e-12
Identities = 33/73 (45%), Positives = 44/73 (60%)
Frame = +1
Query: 1 LTLKLQEFVKNPALQRGDNLIQLYNNFLTTFESKINPLSLVEIIAHIVEQYVNKRDAVTF 180
LTLKL++F+ Q GD LIQ Y+NF+T FE+KIN L L + QY K AV++
Sbjct: 36 LTLKLEQFIALAVFQAGDALIQFYHNFITDFETKINLLKLAHFAVVVSRQYSEKEAAVSY 95
Query: 181 LEKVETKVKMNDE 219
LE V K++ E
Sbjct: 96 LESVIEKLRATKE 108
>At2g20800.1 68415.m02446 pyridine nucleotide-disulphide
oxidoreductase family protein similar to GI:3718005
alternative NADH-dehydrogenase {Yarrowia lipolytica} ;
contains Pfam profile PF00070: Pyridine
nucleotide-disulphide oxidoreductase
Length = 582
Score = 28.3 bits (60), Expect = 1.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 10 KLQEFVKNPALQRGDNLIQLYNNFLTTF 93
K+QEF K L+ GD+++ +++ +T F
Sbjct: 259 KVQEFTKITLLEAGDHILNMFDKRITAF 286
>At2g26900.1 68415.m03227 bile acid:sodium symporter family protein
low similarity to SP|Q12908 Ileal sodium/bile acid
cotransporter {Homo sapiens}; contains Pfam profile
PF01758: Sodium Bile acid symporter family
Length = 409
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -1
Query: 218 SSFILTFVSTFSRNVTASLLLTYCSTI*AMIST 120
+S + T++S NV S+L+T CSTI A+I T
Sbjct: 204 ASNVATYIS--KGNVALSVLMTTCSTIGAIIMT 234
>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
helicase SDE3 [Arabidopsis thaliana] GI:13811296
Length = 1002
Score = 27.5 bits (58), Expect = 3.2
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +1
Query: 13 LQEFVKNPALQRGD-NLIQLYNNFLTTFESKINPLSLVEIIAHIVEQYVNKRDAVTFLEK 189
++ N +Q D +I Y + + ++ L + E+ VEQ+ + V +
Sbjct: 695 IKRLTANDCVQEEDIGVITPYRQQVMKIKEVLDRLDMTEVKVGSVEQFQGQEKQVIIIST 754
Query: 190 VETKVKMNDEALALC 234
V + +K N+ A C
Sbjct: 755 VRSTIKHNEFDRAYC 769
>At1g03860.3 68414.m00370 prohibitin, putative similar to SP|P24142
Prohibitin (B-cell receptor associated protein 32) (BAP
32) {Rattus norvegicus}; contains Pfam profile PF01145:
SPFH domain / Band 7 family
Length = 286
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 49 GDNLIQLYNNFLTTFESKINPLSLVEIIAHIVEQYVNKRDAVTFLEKVETKVK 207
GD L Q+Y + ++ P + E + +V QY N +T E V +++
Sbjct: 109 GDRLPQIYRTLGENYSERVLPSIIHETLKAVVAQY-NASQLITQREAVSREIR 160
>At1g03860.2 68414.m00368 prohibitin, putative similar to SP|P24142
Prohibitin (B-cell receptor associated protein 32) (BAP
32) {Rattus norvegicus}; contains Pfam profile PF01145:
SPFH domain / Band 7 family
Length = 221
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 49 GDNLIQLYNNFLTTFESKINPLSLVEIIAHIVEQYVNKRDAVTFLEKVETKVK 207
GD L Q+Y + ++ P + E + +V QY N +T E V +++
Sbjct: 44 GDRLPQIYRTLGENYSERVLPSIIHETLKAVVAQY-NASQLITQREAVSREIR 95
>At1g03860.1 68414.m00369 prohibitin, putative similar to SP|P24142
Prohibitin (B-cell receptor associated protein 32) (BAP
32) {Rattus norvegicus}; contains Pfam profile PF01145:
SPFH domain / Band 7 family
Length = 286
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 49 GDNLIQLYNNFLTTFESKINPLSLVEIIAHIVEQYVNKRDAVTFLEKVETKVK 207
GD L Q+Y + ++ P + E + +V QY N +T E V +++
Sbjct: 109 GDRLPQIYRTLGENYSERVLPSIIHETLKAVVAQY-NASQLITQREAVSREIR 160
>At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containing
protein low similarity to prediabetic NOD sera-reactive
autoantigen [Mus musculus] GI:6670773,
anaphase-promoting complex subunit 7 [Homo sapiens]
GI:6180015; contains Pfam profile PF00515: TPR Domain
Length = 558
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 121 VEIIAHIVEQYVNKRDAVTFLEKVETKVKMNDEAL 225
+E+ A +++++ N +T KVE + NDEA+
Sbjct: 232 LELFAELLQRFPNNVHLLTETAKVEAIIGKNDEAI 266
>At5g50020.1 68418.m06195 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 407
Score = 25.8 bits (54), Expect = 9.7
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Frame = +1
Query: 46 RGDNLIQLYN-----NFLTTFESKINPLSLVEIIAHIVEQYVNKRDAVTFLEKVETKVKM 210
R DN I +YN NF TF SK+ P S + A I E+ T E+ E +
Sbjct: 255 RSDNRINVYNRGCSNNFFETFCSKVKP-SRNDFRAFIKEEPPRNITLATTWERPEEADEE 313
Query: 211 NDE 219
N E
Sbjct: 314 NRE 316
>At5g24930.1 68418.m02952 zinc finger (B-box type) family protein
similar to CONSTANS-like protein 1 GI:4091804 from
[Malus x domestica]
Length = 406
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 273 DYDAAEKIIEHLESTLEDADGVTPVHGRFYKL 368
DY + +E LE DGV PV R ++
Sbjct: 230 DYGNVDPKVESLEQNSSGTDGVVPVENRTVRI 261
>At3g03380.1 68416.m00336 DegP protease, putative contains
similarity to degP GI:2623992 from [Bradyrhizobium
japonicum]
Length = 1097
Score = 25.8 bits (54), Expect = 9.7
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +1
Query: 7 LKLQEFVKNPALQRGDN--LIQLYNNFLTTFESKI--NPLSLVEI 129
++ E + PALQRGD+ L+ L N T I NP + + I
Sbjct: 714 IRAAELLPEPALQRGDSVYLVGLSRNLQATSRKSIVTNPCAALNI 758
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,971,658
Number of Sequences: 28952
Number of extensions: 147361
Number of successful extensions: 388
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -