Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30004
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC) si...    77   1e-14
At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA) si...    77   1e-14
At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD) ri...    75   3e-14
At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB) id...    75   3e-14
At3g05180.1 68416.m00565 GDSL-motif lipase/hydrolase family prot...    29   2.5  
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea...    27   5.8  
At5g51195.1 68418.m06348 hypothetical protein                          27   7.7  
At5g44620.1 68418.m05467 cytochrome P450 family protein similar ...    27   7.7  

>At1g74270.1 68414.m08601 60S ribosomal protein L35a (RPL35aC)
           similar to ribosomal protein L33B GB:NP_014877 from
           [Saccharomyces cerevisiae]
          Length = 112

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 37/69 (53%), Positives = 45/69 (65%)
 Frame = +3

Query: 255 KHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 434
           K   Y+Y+AK +           +  R IWGKVTRPHGNSG VRAKF SNLP ++MG R+
Sbjct: 52  KRMAYIYKAKTKK--------NGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRV 103

Query: 435 RVMLYPSRI 461
           RV +YPS I
Sbjct: 104 RVFMYPSNI 112



 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 133 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAG 255
           RLY +    GYKR   NQ+ NT+L+++EG   + +  +Y G
Sbjct: 11  RLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKG 51


>At1g07070.1 68414.m00753 60S ribosomal protein L35a (RPL35aA)
           similar to ribosomal protein L35a GI:57118 from [Rattus
           norvegicus]
          Length = 112

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 37/69 (53%), Positives = 45/69 (65%)
 Frame = +3

Query: 255 KHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 434
           K   Y+Y+AK +           +  R IWGKVTRPHGNSG VRAKF SNLP ++MG R+
Sbjct: 52  KRMAYIYKAKTKK--------NGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRV 103

Query: 435 RVMLYPSRI 461
           RV +YPS I
Sbjct: 104 RVFMYPSNI 112



 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +1

Query: 133 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAG 255
           RLY +    GYKR   NQ+ NT+L++VEG     +  +Y G
Sbjct: 11  RLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKG 51


>At3g55750.1 68416.m06194 60S ribosomal protein L35a (RPL35aD)
           ribosomal protein L35a.e.c15, Saccharomyces cerevisiae,
           PIR:S44069
          Length = 111

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 36/69 (52%), Positives = 45/69 (65%)
 Frame = +3

Query: 255 KHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 434
           K   Y+Y+AK +           +  R IWGKVTRPHGNSG VR+KF SNLP ++MG R+
Sbjct: 51  KRLAYIYKAKTKK--------NGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARV 102

Query: 435 RVMLYPSRI 461
           RV +YPS I
Sbjct: 103 RVFMYPSNI 111



 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 133 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAG 255
           RLY +    GYKR   NQ+ NT+L+++EG   + +  +Y G
Sbjct: 10  RLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKG 50


>At1g41880.1 68414.m04836 60S ribosomal protein L35a (RPL35aB)
           identical to GB:CAB81600 from [Arabidopsis thaliana]
          Length = 111

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 36/69 (52%), Positives = 45/69 (65%)
 Frame = +3

Query: 255 KHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMGHRI 434
           K   Y+Y+AK +           +  R IWGKVTRPHGNSG VR+KF SNLP ++MG R+
Sbjct: 51  KRLAYIYKAKTKK--------NGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARV 102

Query: 435 RVMLYPSRI 461
           RV +YPS I
Sbjct: 103 RVFMYPSNI 111



 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 133 RLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVFYAG 255
           RLY +    GYKR   NQ+ NT+L+++EG   + +  +Y G
Sbjct: 10  RLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKG 50


>At3g05180.1 68416.m00565 GDSL-motif lipase/hydrolase family protein
           similar to early nodulin ENOD8 [Medicago sativa]
           GI:304037, elicitor-induced glycoprotein iEP4 [Daucus
           carota] GI:1911765, lanatoside 15'-O-acetylesterase
           [Digitalis lanata] GI:3688284; contains InterPro Entry
           IPR001087 Lipolytic enzyme, G-D-S-L family
          Length = 379

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = -1

Query: 386 SDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSVHIDAMLPA*KTASLRSFAPSTL 207
           SDT  ++   G L   S ++ FF + TSG +C     + +D ++ A     LR +  S  
Sbjct: 45  SDTGELSSGLGFLPQPSYEITFFRSPTSGRFCN--GRLIVDFLMEAIDRPYLRPYLDSIS 102

Query: 206 RR 201
           R+
Sbjct: 103 RQ 104


>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400); some
           similarity to a group of proteins with homology to
           mammalian apoptosis regulators identified in zebrafish
           (PUBMED:10917738)Apaf-1(gi:7677507)
          Length = 537

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -1

Query: 443 HHSYSVS-HSLGREVRLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSS 276
           H S  +S  +LGRE  L +G D        G + P+ST+L + A+ ++   C  ++S
Sbjct: 304 HQSELLSIDALGRERVLSVGRDRTMQLYKVGIVVPESTRLIYRASESNFECCCFVNS 360


>At5g51195.1 68418.m06348 hypothetical protein
          Length = 267

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -1

Query: 407 EVRLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWC 291
           E++ E+ S+      W      D T   FFA+  SG WC
Sbjct: 209 EIQAEMESEDVAATFWID----DETHDDFFASSKSGWWC 243


>At5g44620.1 68418.m05467 cytochrome P450 family protein similar to
           cytocrhome P450 monooxygenase (GI:14334057) [Gossypium
           arboreum]
          Length = 519

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = +3

Query: 240 SLLCWKHCVYVY-RAKKRTP-IPGGPRG 317
           S LCW  C+++Y + K+R+P +P GP G
Sbjct: 27  STLCW--CLWLYAKCKRRSPPLPPGPWG 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,684,929
Number of Sequences: 28952
Number of extensions: 229397
Number of successful extensions: 655
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)