Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10402
         (773 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60870.1 68414.m06852 expressed protein                             31   0.85 
At1g75400.1 68414.m08759 expressed protein                             28   6.0  

>At1g60870.1 68414.m06852 expressed protein
          Length = 147

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 21/52 (40%), Positives = 25/52 (48%)
 Frame = -1

Query: 359 ETSTKPPYDKRSGTLSSVAARVSTKRHTKATEG*QLHLGVASQRSSRPTAAG 204
           E   K    +R+G L   AA V+ KRH  A  G       AS RS+  TAAG
Sbjct: 94  ELEEKAETARRTGNLMEKAATVAAKRHIAAAMG----SAAASMRSAWKTAAG 141


>At1g75400.1 68414.m08759 expressed protein
          Length = 455

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 373 PCINAKLAPSHRTINEAARSAVLPLVSPLNAIQKLQKANSFTLVLPAN 230
           P   A+ +P H+   + + S +L L SP+N     +  +SF L   +N
Sbjct: 169 PSRRARRSPGHQLFRQVSDSQILGLKSPINNYSISEGRSSFVLSTCSN 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,243,192
Number of Sequences: 28952
Number of extensions: 319102
Number of successful extensions: 717
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)