Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10397
         (845 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11) ...    93   3e-19
At3g05360.1 68416.m00584 disease resistance family protein / LRR...    30   1.7  
At3g13600.1 68416.m01712 calmodulin-binding family protein conta...    29   2.9  
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ...    28   6.8  
At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-L...    28   6.8  
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ...    28   9.0  
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ...    28   9.0  
At4g21680.1 68417.m03140 proton-dependent oligopeptide transport...    28   9.0  
At2g39130.1 68415.m04807 amino acid transporter family protein b...    28   9.0  

>At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11)
           identical to DNA repair and meiosis protein (Mre11)
           GI:5524769 from [Arabidopsis thaliana]
          Length = 720

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 47/100 (47%), Positives = 64/100 (64%), Gaps = 7/100 (7%)
 Frame = +2

Query: 2   ELLSDQIKNFSRT---VNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDILSITGLVNY 172
           +++SDQ  NF      VNYEDP+ N+  P+ SIHGNHDDP G  ++S++DILS   LVNY
Sbjct: 89  QVVSDQTVNFQNAFGQVNYEDPHFNVGLPVFSIHGNHDDPAGVDNLSAIDILSACNLVNY 148

Query: 173 FGKW----TDYTHVRISPVLLQKGLTRLALYDLAI*KIRD 280
           FGK     +    + + P+L++KG T +ALY L    IRD
Sbjct: 149 FGKMVLGGSGVGQITLYPILMKKGSTTVALYGLG--NIRD 186



 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
 Frame = +1

Query: 256 LSHLKDQRLSRLF-AEKKVEMERPD-----ETLDWFNLFVLHQNHADRGHSNYIPEGVLP 417
           L +++D+RL+R+F     V+  RP+     +  DWFN+ VLHQN       N I E  LP
Sbjct: 181 LGNIRDERLNRMFQTPHAVQWMRPEVQEGCDVSDWFNILVLHQNRVKSNPKNAISEHFLP 240

Query: 418 NFLDLVVWGHEHDSHICPMK 477
            FLD +VWGHEH+  I P +
Sbjct: 241 RFLDFIVWGHEHECLIDPQE 260



 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 34/78 (43%), Positives = 47/78 (60%)
 Frame = +3

Query: 513 QPGSTVATSLAAGEALPKHCGLLEIHKGNFKLTPLPLQTVRPFIFKTIVLSEENIGSEDV 692
           QPGS+VATSL  GE+ PKH  LLEI    ++ T +PL +VRPF +  IVL +E+    D 
Sbjct: 270 QPGSSVATSLIDGESKPKHVLLLEIKGNQYRPTKIPLTSVRPFEYTEIVLKDES--DIDP 327

Query: 693 NENEKVQEFLKTELMKLL 746
           N+   + E L   +  L+
Sbjct: 328 NDQNSILEHLDKVVRNLI 345


>At3g05360.1 68416.m00584 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to
           elicitor-inducible LRR receptor-like protein EILP
           [Nicotiana tabacum] gi|6635236|dbj|BAA88636; similar to
           Cf-2.2 [Lycopersicon pimpinellifolium]
           gi|1184077|gb|AAC15780
          Length = 786

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +3

Query: 564 KHCGLLEIHKGNFK--LTPLPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFLKTELM 737
           +H  L++I +  F   L+PL     R  +   +  +  NIG+ED    EK  EF  +  M
Sbjct: 523 QHLRLIDISQNGFSGTLSPLYFSNWREMVTSVLEENGSNIGTEDWYMGEKGPEFSHSNSM 582

Query: 738 KLLMR 752
            ++ +
Sbjct: 583 TMIYK 587


>At3g13600.1 68416.m01712 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 605

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 418 NFLDLVVWGHEHDSHICPMKGNKTEKDSFFVYNQ 519
           NF+D + +  E+D  I  +K + T++D F +Y Q
Sbjct: 352 NFMDFLSFLRENDVDITDVKMSPTDEDEFSIYKQ 385


>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 578

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 714 LEPFHFH*HPHCLYFP 667
           +EPF FH H H LY P
Sbjct: 433 IEPFEFHGHKHPLYLP 448


>At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-LIKE
            PROTEIN KIF4, Homo sapiens, EMBL:AF179308
          Length = 1051

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 275  RDFHVFLLKKKWKWRDPMK 331
            R  H +LL+ KWKW+ P K
Sbjct: 995  RSHHQWLLQFKWKWQKPWK 1013


>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
           protein low similarity to tumor-rejection antigen SART3
           [Mus musculus] GI:7637845; contains INTERPRO:IPR000504
           RNA-binding region RNP-1 (RNA recognition motif) domain
          Length = 817

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 666 EENIGSEDVNENEKVQEFL 722
           EENI  +D+++ EK QEF+
Sbjct: 280 EENISKQDLSDTEKFQEFM 298


>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
           protein low similarity to tumor-rejection antigen SART3
           [Mus musculus] GI:7637845; contains INTERPRO:IPR000504
           RNA-binding region RNP-1 (RNA recognition motif) domain
          Length = 816

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 666 EENIGSEDVNENEKVQEFL 722
           EENI  +D+++ EK QEF+
Sbjct: 280 EENISKQDLSDTEKFQEFM 298


>At4g21680.1 68417.m03140 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 589

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 125 SVSSLDILSITGLVNYFGKWTDYTHVRISPVLLQKGLTRL 244
           S+SS DILS+   +  + ++ D    R++     KGLT L
Sbjct: 381 SMSSFDILSVAFFIFAYRRFLDPLFARLNKTERNKGLTEL 420


>At2g39130.1 68415.m04807 amino acid transporter family protein
           belongs to INTERPRO:IPR002422 amino acid/polyamine
           transporter, family II
          Length = 550

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 496 LSLFYFPSLDKYGYHAHGPTLQDLKSLVALLLEYSYC 386
           L LF+   +D+ G H+ G TL +L +L   +  Y YC
Sbjct: 320 LCLFWIGLVDEVGIHSKGTTL-NLSTLPVAIGLYGYC 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,283,435
Number of Sequences: 28952
Number of extensions: 360925
Number of successful extensions: 872
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)