Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20183
         (800 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57950.1 68418.m07251 26S proteasome regulatory subunit, puta...    43   3e-04
At5g59810.1 68418.m07499 subtilase family protein subtilisin-lik...    29   3.6  
At3g01680.1 68416.m00099 expressed protein                             28   8.3  

>At5g57950.1 68418.m07251 26S proteasome regulatory subunit,
           putative contains similarity to 26S proteasome
           non-ATPase subunit 9 SP:O00233 from [Homo sapiens]
          Length = 227

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/47 (38%), Positives = 31/47 (65%)
 Frame = +1

Query: 277 GLKGSLVDELGYPRDDIDVYEVRHARHKIICLQNDHKKVMQLIERGI 417
           GL G+L+D  G+PR+DID+  VR  R ++  L+++H ++ + I   I
Sbjct: 38  GLSGNLIDSEGFPREDIDIPMVRTERRRLAELRSEHGEITEKINVNI 84



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 20/84 (23%), Positives = 42/84 (50%)
 Frame = +3

Query: 510 ETVNDPTFATISFVDKGSPAEEAGLRAHDELVQFGSVNYKNFKDVSQIMRIVSHSINYGI 689
           + V    FA +  +++ SPA E GL+  D++++FG+V   +   + ++      +    +
Sbjct: 136 DVVTSIPFAMVDEINESSPAAEGGLQLGDQVLKFGNVEGGD-NLLQRLAAEAQSNQGQAV 194

Query: 690 TVIVRRENADLTFELVPKPWAKPG 761
           +V V R+ A +   + P+ W   G
Sbjct: 195 SVQVMRQGAKVVLSVTPRIWQGRG 218


>At5g59810.1 68418.m07499 subtilase family protein subtilisin-like
           protease AIR3, Arabidopsis thaliana, EMBL:AF098632
          Length = 778

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +1

Query: 211 GRKR*NRTFDSWSLRVLASNNVGLKGSLVDELGYPRDDI 327
           GRK    T  SW+  +LA N V  K SL ++ GY  D I
Sbjct: 122 GRKL--HTTHSWNFMLLAKNGVVHKSSLWNKAGYGEDTI 158


>At3g01680.1 68416.m00099 expressed protein 
          Length = 740

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 370 LQNDHKKVMQLIE-RGIAKVYEDLIDSPGIDSEEINSCLNGYPVFKKV 510
           +Q  H    + ++ RG+  + ED++D   +DSE+ N+ +   P   K+
Sbjct: 47  IQQTHSPDAREVQVRGLLSLVEDILDRATLDSEDTNASMLPLPTEDKL 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,284,626
Number of Sequences: 28952
Number of extensions: 323761
Number of successful extensions: 733
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)