Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20167
(777 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 33 0.21
At5g55180.1 68418.m06879 glycosyl hydrolase family 17 protein si... 30 2.0
At5g23840.2 68418.m02798 MD-2-related lipid recognition domain-c... 29 2.6
At5g23840.1 68418.m02799 MD-2-related lipid recognition domain-c... 29 2.6
At5g24590.2 68418.m02905 turnip crinkle virus-interacting protei... 29 4.5
At3g21290.1 68416.m02690 dentin sialophosphoprotein-related cont... 29 4.5
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 28 6.0
At1g19770.1 68414.m02471 purine permease-related low similarity ... 28 6.0
At4g18650.1 68417.m02760 transcription factor-related contains w... 28 7.9
At3g60280.1 68416.m06738 uclacyanin 3 (UCC3) identical to uclacy... 28 7.9
At3g49530.1 68416.m05413 no apical meristem (NAM) family protein... 28 7.9
At1g51090.1 68414.m05744 heavy-metal-associated domain-containin... 28 7.9
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 11 PSESPSTELPKPITSETPIDE-IAGPEESNFPPSASSGYGGEPDYVEEDQAFGPGT 175
PS S S E+ P+ + TP E I P +SN P S PD E +A P +
Sbjct: 839 PSSSESGEISTPVQAPTPDSEDIEAPSDSNHSPVFKSSPAPSPDSEPEVEAPVPSS 894
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = +2
Query: 8 RPSESPSTELPKPITS---ETPIDEIAGPEESNFP 103
+P ESP E PKP S + P E PEES P
Sbjct: 518 KPEESPKPEPPKPEESPKPQPPKQETPKPEESPKP 552
>At5g55180.1 68418.m06879 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 460
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 149 EDQAFGPGTCRYGGKVYVSAQQIPRDDPCDF 241
+ A G GTC +GG YV +Q P+ C+F
Sbjct: 427 QKNARGVGTCNFGGAAYVVSQP-PKYGKCEF 456
>At5g23840.2 68418.m02798 MD-2-related lipid recognition
domain-containing protein / ML domain-containing protein
contains Pfam profile PF02221: ML domain
Length = 140
Score = 29.5 bits (63), Expect = 2.6
Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Frame = +3
Query: 327 FLLPPIRVSCIDGDYTQCNHHDYNNNNHITSSFPYPPI*GRSSKKRMSNKRTHL*SRRSS 506
F LP + S ID +Y N HDY + + I S P G ++ HL S
Sbjct: 17 FFLPAL-CSAIDFEYCTKNGHDYGSISQIWVS----PSDGPQENPTIT---IHLFGSASK 68
Query: 507 TASSGPCLHCTC-GGD--GQMK----CDPKACTPE 590
S+G ++ T GD G +K CD AC PE
Sbjct: 69 DISAGTLVYVTYRSGDFTGLLKTYDLCDVSACNPE 103
>At5g23840.1 68418.m02799 MD-2-related lipid recognition
domain-containing protein / ML domain-containing protein
contains Pfam profile PF02221: ML domain
Length = 167
Score = 29.5 bits (63), Expect = 2.6
Identities = 31/95 (32%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Frame = +3
Query: 327 FLLPPIRVSCIDGDYTQCNHHDYNNNNHITSSFPYPPI*GRSSKKRMSNKRTHL*SRRSS 506
F LP + S ID +Y N HDY + + I S P G ++ HL S
Sbjct: 17 FFLPAL-CSAIDFEYCTKNGHDYGSISQIWVS----PSDGPQENPTIT---IHLFGSASK 68
Query: 507 TASSGPCLHCTC-GGD--GQMK----CDPKACTPE 590
S+G ++ T GD G +K CD AC PE
Sbjct: 69 DISAGTLVYVTYRSGDFTGLLKTYDLCDVSACNPE 103
>At5g24590.2 68418.m02905 turnip crinkle virus-interacting protein /
TCV-interacting protein (TIP) contains Pfam PF02365: No
apical meristem (NAM) domain; similar to NAC2
(GI:6456751) {Arabidopsis thaliana}; identical to cDNA
TIP mRNA, GI:9408600
Length = 451
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/62 (32%), Positives = 25/62 (40%)
Frame = +2
Query: 11 PSESPSTELPKPITSETPIDEIAGPEESNFPPSASSGYGGEPDYVEEDQAFGPGTCRYGG 190
P ES S E+ ++S T +DE+ E S P P V E P CR G
Sbjct: 174 PEESKSCEVEPAVSSPTVVDEVEMSEVSPVFPKTEE---TNPCDVAESSLVIPSECRSGY 230
Query: 191 KV 196
V
Sbjct: 231 SV 232
>At3g21290.1 68416.m02690 dentin sialophosphoprotein-related contains
weak similarity to Dentin sialophosphoprotein precursor
(Swiss-Prot:Q9NZW4) [Homo sapiens]
Length = 1192
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +2
Query: 14 SESPSTELPKPITSET---PIDEIAGPEESNFPPSASSGYGGEPD 139
SE ELP+P+ +T PI+E +SN PS S G + D
Sbjct: 886 SELELGELPEPLGEDTALKPIEEKTSFRQSNLKPSTSEKLGIDSD 930
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 5 TRPSESPSTELPKPITSETPID-EIAGPEESNFPPSASSG 121
++P +SP E PKP S P +I P + PP+ + G
Sbjct: 466 SKPEDSPKPEQPKPEESPKPEQPQIPEPTKPVSPPNEAQG 505
>At1g19770.1 68414.m02471 purine permease-related low similarity to
purine permease [Arabidopsis thaliana] GI:7620007;
contains Pfam profile PF03151: Domain of unknown
function, DUF250
Length = 393
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 113 SSGYGGEPDYVEEDQAFGPGTCRYGG 190
SS +GGEPD EE+ A G + G
Sbjct: 206 SSSFGGEPDEAEENYARGSWAALFAG 231
>At4g18650.1 68417.m02760 transcription factor-related contains weak
similarity to TGACG-sequence specific DNA-binding
protein TGA-2.1 (TGA2.1) (Swiss-Prot:O24160) [Nicotiana
tabacum]
Length = 232
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = -3
Query: 250 AEAKITGIISRNLLG*YIYFAAVATSARSECLVFFNIVWLSAITARGTW 104
+E ++ +IS+ Y+ A + R + L FF VWL+ + +W
Sbjct: 40 SETELRHLISKLTTHHKAYYTAKWAAIREDVLAFFGSVWLNPLENACSW 88
>At3g60280.1 68416.m06738 uclacyanin 3 (UCC3) identical to
uclacyanin 3 GI:3395770 from [Arabidopsis thaliana];
contains Pfam profile PF02298: Plastocyanin-like domain;
identical to cDNA uclacyanin 3 (UCC3)GI:3395769
Length = 222
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Frame = +2
Query: 11 PSESPSTELPKPITSETPIDEIAGPEE-------SNFPPSASSGYGGEPD 139
P +PST P T TP + P S+ PPSAS G PD
Sbjct: 131 PPSTPSTPSSPPSTPSTPSSPPSPPSPPSPSLPPSSLPPSASPPTNGTPD 180
>At3g49530.1 68416.m05413 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to NAC2 - Arabidopsis thaliana, EMBL:AF201456
Length = 469
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 66 LTKSQVQKKVISLQVPRAVMAESQTMLKKTKHSDLALVATAAK 194
+TKS+V + + + V R +AES ++ HSD AT A+
Sbjct: 191 VTKSEVSEVIKTEDVKRHDIAESSLVISGDSHSDACDEATTAE 233
>At1g51090.1 68414.m05744 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 171
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 353 GHSYRGQQKPCIGSS*HPCMGGGQLCCKQ 267
G Y QQ C G + GGG+ CC +
Sbjct: 133 GPYYEAQQYQCYGRPVYESWGGGRQCCHE 161
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,619,428
Number of Sequences: 28952
Number of extensions: 384854
Number of successful extensions: 1149
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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