Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20160
         (544 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19690.1 68416.m02494 pathogenesis-related protein, putative ...    32   0.28 
At4g21230.1 68417.m03070 protein kinase family protein contains ...    28   4.6  
At1g27470.1 68414.m03349 transducin-related / WD-40 repeat prote...    28   4.6  
At4g07410.1 68417.m01136 transducin family protein / WD-40 repea...    27   6.1  
At1g55820.1 68414.m06400 hydroxyproline-rich glycoprotein family...    27   6.1  
At5g01450.1 68418.m00058 expressed protein                             27   8.1  

>At3g19690.1 68416.m02494 pathogenesis-related protein, putative
           similar to PR-1a protein GI:19944 GB:X06930 from
           [Nicotiana tabacum]; contains Pfam profile PF00188:
           SCP-like extracellular protein
          Length = 161

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 28/88 (31%), Positives = 41/88 (46%)
 Frame = +3

Query: 234 LWLRKAVLKSGGLTAYEKQAIVDAHNRLRQTVALGQITKQPPAANMMEMIWDDELAATAQ 413
           L+L    L  G L    +Q  ++AHN  R  V L  +            +WDDE+AA A 
Sbjct: 9   LFLLAIALFYGSLAEDLQQQFLEAHNEARNEVGLDPL------------VWDDEVAAYAA 56

Query: 414 RWSDQCIPAHDRAAQRDLGRFPVGQNLA 497
            +++Q I  +D A     G  P G+N+A
Sbjct: 57  SYANQRI--NDCALVHSNG--PFGENIA 80


>At4g21230.1 68417.m03070 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 642

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = +1

Query: 67  FDVSXITSENILYSSYESQLKRANQLKFRVLCINFLIKMIPLVLFVLGAI 216
           FD+S  + +    SS+ +  +R++Q K +      +  ++P+V  +LG +
Sbjct: 241 FDLSVTSEQKQPLSSHNNNTRRSDQGKSKDRSKTLIFAVVPIVAIILGLV 290


>At1g27470.1 68414.m03349 transducin-related / WD-40 repeat
           protein-related contains 6 WD-40 repeats (PF00400) (2
           weak); related to KIAA1988 protein (GI:18916910) [Homo
           sapiens]
          Length = 810

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 206 WELFSQQQKVVAQESSFKIWR 268
           W+LF  +QKVV     F IW+
Sbjct: 93  WDLFDLKQKVVLDSIGFSIWQ 113


>At4g07410.1 68417.m01136 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400) (2
           weak); similar to Vegetatible incompatibility protein
           HET-E-1 (SP:Q00808) {Podospora anserina}
          Length = 815

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +2

Query: 206 WELFSQQQKVVAQESSFKIWRFDCLRETGHCGRTQPSQTDCCS-RTNYQTAPSS*HDGND 382
           W+LF  +QK+V +     IW+      +G     +  +    S ++N +    S  DG+D
Sbjct: 93  WDLFDLKQKIVLESIGISIWQMALAPISGFSSDVEGIKNGYLSEKSNDEEEIGSEEDGSD 152


>At1g55820.1 68414.m06400 hydroxyproline-rich glycoprotein family
           protein
          Length = 575

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 290 GHCGRTQPSQTDCCSRTNYQTAPSS*HDGNDLGR*IG 400
           G  G  QP+Q    + T YQT P   H    +G  IG
Sbjct: 519 GLMGMHQPTQPMAAASTTYQTLPPPPHTTTAMGEPIG 555


>At5g01450.1 68418.m00058 expressed protein
          Length = 444

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 86  VIXETSNFFYYLNFPGIRCTMS 21
           V+ +T+N +Y  +FP  +CT+S
Sbjct: 255 VLYDTTNAYYNCSFPNDKCTLS 276


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,939,953
Number of Sequences: 28952
Number of extensions: 238972
Number of successful extensions: 591
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)