Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20155
         (667 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...    81   9e-16
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)            80   1e-15
At4g36050.2 68417.m05132 endonuclease/exonuclease/phosphatase fa...    29   2.8  
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    29   3.7  
At5g13640.1 68418.m01582 lecithin:cholesterol acyltransferase fa...    28   6.4  
At3g09210.1 68416.m01095 KOW domain-containing transcription fac...    27   8.5  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score = 80.6 bits (190), Expect = 9e-16
 Identities = 36/55 (65%), Positives = 44/55 (80%)
 Frame = +2

Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 403
           L +  +WPK IR+QRQK +L++RLKVPP +NQFT+TLDK  A  LFKIL KYRPE
Sbjct: 42  LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE 96



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 21/26 (80%), Positives = 23/26 (88%), Gaps = 1/26 (3%)
 Frame = +2

Query: 593 LPALCRKMGVPYCIVKG-NPLGALVH 667
           LPALCRKM VPYCIVKG + LGA+VH
Sbjct: 160 LPALCRKMEVPYCIVKGKSRLGAVVH 185



 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +3

Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP-SISASSARRL 293
           NPLFE+RPK F IG  + P +DLSR++  P SI     +R+
Sbjct: 20  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 60



 Score = 34.7 bits (76), Expect = 0.056
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +3

Query: 531 EEEGALVVIAHDVDPIELVLF----CQRYAVKWAYHTALSRAIRSVH 659
           + +  LVVIAHDVDPIELV++    C++  V +      SR    VH
Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVH 185


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 35/55 (63%), Positives = 44/55 (80%)
 Frame = +2

Query: 239 LVQICRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 403
           L +  +WPK IR+QRQK +L++RLKVPP +NQFT+TLDK  A  LFK+L KYRPE
Sbjct: 43  LSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE 97



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 21/26 (80%), Positives = 23/26 (88%), Gaps = 1/26 (3%)
 Frame = +2

Query: 593 LPALCRKMGVPYCIVKG-NPLGALVH 667
           LPALCRKM VPYCIVKG + LGA+VH
Sbjct: 161 LPALCRKMEVPYCIVKGKSRLGAVVH 186



 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +3

Query: 174 NPLFEKRPKNFAIGQGIQPTRDLSRFVDGP-SISASSARRL 293
           NPLFE+RPK F IG  + P +DLSR++  P SI     +R+
Sbjct: 21  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 61



 Score = 34.7 bits (76), Expect = 0.056
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +3

Query: 531 EEEGALVVIAHDVDPIELVLF----CQRYAVKWAYHTALSRAIRSVH 659
           + +  LVVIAHDVDPIELV++    C++  V +      SR    VH
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVH 186


>At4g36050.2 68417.m05132 endonuclease/exonuclease/phosphatase
           family protein
          Length = 609

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = -2

Query: 663 TSAPSGLPLTMQYG-TPILRHNA--GRREPAQWDQHHER*PQVRLLLLDQLGDCVVPD 499
           +S  + LP+T + G T ++  N+  G+ E +   +  E   +  LL++DQ G CV+ D
Sbjct: 86  SSCETALPVTAEEGITGLVNSNSRGGKSETSTVAEGLEEYEKEELLMIDQEGRCVITD 143


>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
            family protein (MSS2) similar to SMC-related protein MSS2
            [Arabidopsis thaliana] GI:9965743; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -1

Query: 499  SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 341
            + G+ P+  R +F   +  +S  QP  P CF L P  L  LE + +CS++  +
Sbjct: 971  NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021


>At5g13640.1 68418.m01582 lecithin:cholesterol acyltransferase
           family protein / LACT family protein similar to
           SP|P40345 Phospholipid:diacylglycerol acyltransferase
           (EC 2.3.1.158) (PDAT) {Saccharomyces cerevisiae};
           contains Pfam profile PF02450: Lecithin:cholesterol
           acyltransferase (phosphatidylcholine-sterol
           acyltransferase)
          Length = 671

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 511 CCAGSDGVGPLWWRLIFLGNLSFSSFPQ 428
           CC     V   WW L+FL N   +SFPQ
Sbjct: 54  CCWFIGCVCVTWWFLLFLYNAMPASFPQ 81


>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
           family protein ; est match
          Length = 333

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 460 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 365
           L N S S  P+P+FPGC  +R +  + +  ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,687,117
Number of Sequences: 28952
Number of extensions: 264988
Number of successful extensions: 855
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)