Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20154
         (580 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53390.1 68416.m05892 transducin family protein / WD-40 repea...    33   0.14 
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea...    33   0.18 
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea...    31   0.73 
At4g25900.1 68417.m03724 aldose 1-epimerase family protein simil...    29   2.2  
At2g32620.1 68415.m03982 cellulose synthase family protein simil...    29   3.0  
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea...    28   3.9  
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea...    28   3.9  
At4g07410.1 68417.m01136 transducin family protein / WD-40 repea...    27   6.8  
At3g61480.1 68416.m06885 expressed protein                             27   6.8  
At2g20780.1 68415.m02442 mannitol transporter, putative similar ...    27   6.8  
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea...    27   6.8  
At5g56400.1 68418.m07040 F-box family protein contains F-box dom...    27   9.0  
At2g32610.1 68415.m03981 cellulose synthase family protein simil...    27   9.0  

>At3g53390.1 68416.m05892 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to Dystrophia myotonica-containing WD repeat
           motif protein  DMR-N9 protein  (DMWD) (DM9) (SP:Q08274)
           [Mus musculus]; simlar to DMR protein GI:18028289 [Homo
           sapiens];
          Length = 558

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +1

Query: 199 LFNVGTEKVL---RMLRGSATCISWSDDSKYILQVNSKGLVEILSAADHDV 342
           +F+  T+K++   +   G+  C SWS D KYIL      LV++ S  D  V
Sbjct: 329 IFDFLTQKLVCGGKSYYGALLCCSWSMDGKYILTGGEDDLVQVWSMEDRKV 379


>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to Dystrophia myotonica-containing WD repeat
           motif protein  DMR-N9 protein  (DMWD) (DM9) (SP:Q08274)
           [Mus musculus]; simlar to DMR protein GI:18028289 [Homo
           sapiens];
          Length = 544

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +1

Query: 199 LFNVGTEKVL---RMLRGSATCISWSDDSKYILQVNSKGLVEILSAADHDV 342
           +F+  T+K++   +   G+  C +WS D KY+L      LV++ S  D  V
Sbjct: 329 IFDFSTQKLVCGVKSYYGALLCCAWSMDGKYLLTGGEDDLVQVWSMEDRKV 379


>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
           family protein contains similarity to regulatory protein
           Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
           (6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
          Length = 781

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 437 VMIWDTKNRMS*KRFQHLHTSLL*LRSYNAKNTSLAATMQNGDTVIY 577
           V IWD + ++  K+ +  HTS +    YN K+  LA+    GD +++
Sbjct: 117 VKIWDLQRKLCIKKLKG-HTSTITGVMYNCKDEHLASVSVGGDLIVH 162


>At4g25900.1 68417.m03724 aldose 1-epimerase family protein similar
           to apospory-associated protein C; APOC [Chlamydomonas
           reinhardtii] GI:6970044 Pfam profile PF01263: Aldose
           1-epimerase
          Length = 318

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = -3

Query: 458 SSCPISLHYRSWSTAMLRWPSRWKLAHQLSFNDKCCKLRTS*SAADNISTKPFEFTCNM- 282
           S+  + L  RS +  +  WP +++   +++         TS     N  TKPF FT  + 
Sbjct: 129 STAHVDLIVRSSNEDLKIWPHKFEYRLRVALGHDGDLTLTS--RVKNTDTKPFNFTFALH 186

Query: 281 --YLLSSLHEIHVADPRNI 231
             + +S++ EIHV    N+
Sbjct: 187 PYFAVSNISEIHVEGLHNL 205


>At2g32620.1 68415.m03982 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -4
           [gi:9622880], -9 [gi:9622890]
          Length = 757

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -3

Query: 524 HCSYEVTADWCEGVGNVF--MTFGSSCPISLHYRSWSTAML 408
           HC YE    W + +G ++  M+   +  I +H R W+++ +
Sbjct: 438 HCDYESQTSWGKTIGWLYDSMSEDMNTSIGIHSRGWTSSYI 478


>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
           family protein contains 6 (4 significant) WD-40 repeats
           (PF0400); nuclear protein HIRA, mouse, PIR:S68141
          Length = 1051

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +1

Query: 199 LFNVGT-EKVLRMLR---GSATCISWSDDSKYILQVNSKGLVEI 318
           L N+ T E++L  LR   GS  C+ W+ +S+Y+   +   +++I
Sbjct: 42  LQNIDTKERLLATLRDHFGSVNCVRWAKNSRYVASGSDDQVIQI 85


>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
           family protein similar to 66 kDa stress protein
           (SP:P90587) [Physarum polycephalum (Slime mold)];
           similar to WDR1 protein GB:AAD05042 [Gallus gallus]
           (Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
           repeats (PF00400)
          Length = 609

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 238 RGSATCISWSDDSKYILQVNSKGLVEILSAADHDVRSL 351
           +GS   +SWS D K +L V++    +I   +D+   SL
Sbjct: 232 KGSIYAVSWSPDGKQVLTVSADKSAKIWDISDNGSGSL 269


>At4g07410.1 68417.m01136 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400) (2
           weak); similar to Vegetatible incompatibility protein
           HET-E-1 (SP:Q00808) {Podospora anserina}
          Length = 815

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 226 LRMLRGSATCISWSDDSKYILQVNSKGLVEILSAAD-HDV 342
           L  + G A  ++WS D+K I   +S GL+    A   H+V
Sbjct: 194 LPRVSGRALSVTWSPDAKRIFSGSSDGLIRCWDATSCHEV 233


>At3g61480.1 68416.m06885 expressed protein
          Length = 1091

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +1

Query: 229 RMLRGSATCISWSDDSKYILQVNSKGLVEILSAADHDVRSLQHLSLKDSWCASFHRDGHR 408
           + L G A C S + + + +     KG+VE+   + H +  L+ +SL D   ++ +     
Sbjct: 206 KKLGGDAVCASVASEQQILAVGTRKGMVELYDLS-HSISLLRTVSLHDWGYSADYTGPVN 264

Query: 409 NIA 417
           NIA
Sbjct: 265 NIA 267


>At2g20780.1 68415.m02442 mannitol transporter, putative similar to 
           mannitol transporter [Apium graveolens var. dulce]
           GI:12004316; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 526

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 520 VATKLQQTGVKVLETFL*HSVLRVPYHYITVLGLRLC 410
           VA  + +T   +  TFL  SV R P  Y++ +G+ LC
Sbjct: 343 VAVGVTKTVFILFATFLIDSVGRKPLLYVSTIGMTLC 379


>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
           family protein contains 10 WD-40 repeats (PF00400);
           similar to 66kDa stress protein (SWISS-PROT: P90587)[
           Physarum polycephalum (Slime mold)]
          Length = 474

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 238 RGSATCISWSDDSKYILQVNSKGLVEILSAAD 333
           +GS   +SWS DSK +L V++    ++   A+
Sbjct: 96  KGSIYAVSWSPDSKRVLTVSADKSAKVWEVAE 127


>At5g56400.1 68418.m07040 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 455

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 407 RWPSRWKLAHQLSFNDK 357
           RW S W   H+L FND+
Sbjct: 65  RWESLWTKVHKLRFNDR 81


>At2g32610.1 68415.m03981 cellulose synthase family protein similar
           to Zea mays cellulose synthase-3 [gi:9622878], -2
           [gi:9622876], -1 [gi:9622874]
          Length = 757

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -3

Query: 524 HCSYEVTADWCEGVGNVFMTFGS--SCPISLHYRSWSTAML 408
           HC YE    W   +G ++ +     +  I +H R W+++ +
Sbjct: 439 HCQYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGWTSSYI 479


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,882,708
Number of Sequences: 28952
Number of extensions: 231630
Number of successful extensions: 631
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)