Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20151
         (795 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21110.1 68416.m02668 phosphoribosylamidoimidazole-succinocar...    32   0.38 
At3g29380.1 68416.m03691 transcription factor IIB (TFIIB) family...    29   2.7  
At5g49110.1 68418.m06079 expressed protein  ; expression support...    28   8.2  
At3g56010.1 68416.m06223 expressed protein                             28   8.2  

>At3g21110.1 68416.m02668
           phosphoribosylamidoimidazole-succinocarboxamide synthase
           / SAICAR synthetase (PUR7) identical to
           phosphoribosylamidoimidazole-succinocarboxamide
           synthase, chloroplast [precursor] SP:P38025 from
           [Arabidopsis thaliana]
          Length = 411

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
 Frame = +1

Query: 385 AFVKIASETAFLSKKCEMIPIEWVTRRLATGS-----FLKRNPGV-----PEASGSLLQN 534
           A V        ++KKC + PIE+V R   TGS     +   N GV      E S  L++N
Sbjct: 167 AIVSSPDRNVVIAKKCSVFPIEFVVRGYVTGSTDTSLWTVYNKGVRNYCGNELSDGLVKN 226

Query: 535 KRRSLRMTQTTIPNGQRSKSFQPNSII 615
           ++    +   T           PN I+
Sbjct: 227 QKLPANILTPTTKAADHDVPISPNEIV 253


>At3g29380.1 68416.m03691 transcription factor IIB (TFIIB) family
           protein contains Pfam profile: PF00382 transcription
           factor TFIIB repeat
          Length = 336

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 84  HSSRDPHRIGSSLHSYLRS--KIAKMSHPKQVGQYKLGK 194
           HS RDP+R+G++ + +L+S   +  +  PK+     L K
Sbjct: 53  HSDRDPNRVGAATNPFLKSGDLVTIIEKPKETASSVLSK 91


>At5g49110.1 68418.m06079 expressed protein  ; expression supported
           by MPSS
          Length = 1487

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +3

Query: 72  HCYIHSSRDPHRIGSSLH----SYLRSKIAKMSHPKQVGQYKLGKL 197
           HC    S  P+ +  S H    SYL+S+ +  S  KQV +Y +  L
Sbjct: 28  HCQTGFSLPPYLLSPSSHDSLLSYLKSRSSSPSPSKQVSEYVIALL 73


>At3g56010.1 68416.m06223 expressed protein
          Length = 201

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 487 KRNPGVPEASGSLLQNKRRSLRMTQTT--IPNG 579
           KR PG+PEA  ++L + RR +  +  T  +P G
Sbjct: 135 KRKPGLPEAPTNMLDDSRRGMPKSGLTFDLPGG 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,342,515
Number of Sequences: 28952
Number of extensions: 402877
Number of successful extensions: 930
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)