Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20148
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43640.1 68415.m05424 signal recognition particle 14 kDa fami...    43   2e-04
At3g52525.1 68416.m05776 ovate protein, putative 83% similar to ...    27   8.6  

>At2g43640.1 68415.m05424 signal recognition particle 14 kDa family
           protein / SRP14 family protein similar to SP|P16254
           Signal recognition particle 14 kDa protein (SRP14) {Mus
           musculus}; contains Pfam profile: PF02290 signal
           recognition particle 14kD protein
          Length = 121

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 21/43 (48%), Positives = 30/43 (69%)
 Frame = +1

Query: 127 MVLLSNDEFLAELTKLFQKARLAGSITMTMKRYDGRSKPQPRE 255
           MVLL  D FL ELT +F+K++  GS+ +T+KR   +SK Q R+
Sbjct: 1   MVLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKRK 43



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +3

Query: 279 EYKCLLRAQSKSKKISTVVEQRDVEKFSTAYSNLLK 386
           EY+CL+RA    K +ST V  +D ++F  +Y+ +LK
Sbjct: 52  EYRCLIRATDGKKTVSTSVGAKDHQRFQASYATILK 87


>At3g52525.1 68416.m05776 ovate protein, putative 83% similar to
           ovate protein (GI:23429649) [Lycopersicon esculentum];
           contains TIGRFAM TIGR01568 : uncharacterized
           plant-specific domain TIGR01568
          Length = 159

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +1

Query: 235 SKPQPREELLQLKIPNTNAYYGHNLRVKRYQQLWNSVMSKSS 360
           SK + RE LLQ  + + N++Y H + V+ + ++W  V S ++
Sbjct: 96  SKDELRE-LLQCFL-SLNSHYHHGIIVRAFSEIWEDVSSAAA 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,212,811
Number of Sequences: 28952
Number of extensions: 243798
Number of successful extensions: 611
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)