Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20146
(634 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 31 0.84
At2g02560.1 68415.m00195 TIP120 protein, putative similar to TBP... 30 1.1
At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type f... 29 1.9
At2g04680.1 68415.m00478 DC1 domain-containing protein contains ... 29 3.4
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 28 4.5
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 28 5.9
At2g42790.1 68415.m05298 citrate synthase, glyoxysomal, putative... 28 5.9
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 27 7.8
At4g37100.1 68417.m05255 hypothetical protein 27 7.8
At2g47390.1 68415.m05915 expressed protein 27 7.8
At2g23520.1 68415.m02807 expressed protein ; expression supporte... 27 7.8
At1g18690.1 68414.m02332 galactosyl transferase GMA12/MNN10 fami... 27 7.8
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 30.7 bits (66), Expect = 0.84
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 320 DGVCLVWNTKFKKTTPEDIFHCQSAVMSATFARFH-PNLILGGTYSGQIVLWD 475
DG ++T+ +P I H + +S+ H PNL+ G+ + LWD
Sbjct: 322 DGTVKGFDTRASDLSPSFIIHAHDSEVSSISYNIHAPNLLATGSADESVKLWD 374
>At2g02560.1 68415.m00195 TIP120 protein, putative similar to
TBP-interacting protein TIP120 GI:1799570 from [Rattus
norvegicus]
Length = 1219
Score = 30.3 bits (65), Expect = 1.1
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +2
Query: 224 ARTVRDLSGLATFHPELVLASYYNSDDAPHDPDGVCLVWNTKFKKTTPEDIFHCQSAVMS 403
A VR S A +V A Y+ + P D + + F + H + A +S
Sbjct: 969 ALQVRTTSPAAFTRATVVTAVKYSVVERPEKLDEIIFPQISSFLMLIKDGDRHVRRAAVS 1028
Query: 404 A--TFARFHPNLILGGTYSGQIVLWDNRVQKR 493
A TFA + PNLI G +L+D V K+
Sbjct: 1029 ALSTFAHYKPNLIKGLLPELLPLLYDQTVIKK 1060
>At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type
family protein contains Pfam domain PF00050: Kazal-type
serine protease inhibitor domain
Length = 117
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +3
Query: 447 RIRDRSCCGIIACKSEPRCSAAAVLGRAHSPGVLPVGDRKPERP*PDLGIDGRRSVPG 620
R++DR C I +++P C V P G R ++ D G G SVPG
Sbjct: 37 RVKDRGGCTINCFRADPVCGTDGVTYWCGCPDAACHGARVVKKGACDTGNAGSASVPG 94
>At2g04680.1 68415.m00478 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 657
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 257 TFHPELVLASYYNSDDAPHDPDGVCLVWNTKFKKTTPEDIFHC 385
T HP+ L + S++AP D CL+ +F + P+ I HC
Sbjct: 179 TSHPQHTL-KHITSEEAPDYADNKCLLCEEEFDQQHPK-IHHC 219
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8
WD-40 repeats (PF00400) (2 weak)
Length = 1108
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 338 WNTKFKKTTPEDIFHCQSAVMSATFARFHPNLILGGTYSGQIVLWDNRVQKR 493
W+ + T H S V S F L+L G+ +G+I LW+ ++R
Sbjct: 329 WSLEDLPTKAALALHQGSTVTSMEFYPMQNTLLLVGSATGEITLWELAARER 380
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +2
Query: 320 DGVCLVWNTKFKKTTPEDIFHCQSAVMSATFARFHPNL---ILGGTYSGQIVLWDNRVQK 490
D + VW+ + K T +F S + ++H + +L +Y G+I+LWD R
Sbjct: 334 DPILRVWDPR-KPGTSAPVFQFSSHSSWISACKWHKSSWFHLLSASYDGKIMLWDLRTAV 392
Query: 491 RT 496
T
Sbjct: 393 MT 394
>At2g42790.1 68415.m05298 citrate synthase, glyoxysomal, putative
strong similarity to SP|P49299 Citrate synthase,
glyoxysomal precursor {Cucurbita maxima}; contains Pfam
profile PF00285: Citrate synthase
Length = 509
Score = 27.9 bits (59), Expect = 5.9
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +3
Query: 405 PRLRGSTLT*SSEARIRDRSCCGIIACKSEPRCSAAAVLGRAHSPGVLPVGD 560
P LRG + S + +RD+ II P +AAA L A P VLP G+
Sbjct: 198 PALRGQDIYDSKQ--VRDKQIIRIIG--KAPTIAAAAYLRMAGRPPVLPSGN 245
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +2
Query: 320 DGVCLVWNTKFKKTTPEDIFHCQSAVMSATFARFHPNL---ILGGTYSGQIVLWDNR 481
D + VW+ + K T +F S + ++H + +L +Y G+I+LWD R
Sbjct: 334 DPILRVWDPR-KPGTSAPVFQFSSHSSWISACKWHKSSWFHLLSASYDGKIMLWDLR 389
>At4g37100.1 68417.m05255 hypothetical protein
Length = 896
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 239 DLSGLATFHPELVLASYYNSDDAPHDPDGV-CLV 337
D GL+ F PE ++ S+Y HDP G CL+
Sbjct: 348 DSLGLSLFRPEFIITSFYRV--FGHDPTGFGCLL 379
>At2g47390.1 68415.m05915 expressed protein
Length = 961
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 225 ATSVPPRRYEPGKDGPLTC 169
AT P Y+P KDGPL C
Sbjct: 668 ATLYLPPGYDPSKDGPLPC 686
>At2g23520.1 68415.m02807 expressed protein ; expression supported
by MPSS
Length = 862
Score = 27.5 bits (58), Expect = 7.8
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 239 DLSGLATFHPELVLASYYNSDDAPHDPDGV-CLV 337
D GL+ F PE ++ S+Y HDP G CL+
Sbjct: 329 DSLGLSLFRPEFIITSFYKV--FGHDPTGFGCLL 360
>At1g18690.1 68414.m02332 galactosyl transferase GMA12/MNN10 family
protein very low similarity to
alpha-1,2-galactosyltransferase, Schizosaccharomyces
pombe [SP|Q09174]
Length = 632
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 607 RRPSIPRSGYGRSGFLSPTGSTPGECARP 521
+ P P G++ L TGS+PG C +P
Sbjct: 315 QNPEFPNIVNGKARILLLTGSSPGPCDKP 343
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,415,208
Number of Sequences: 28952
Number of extensions: 290132
Number of successful extensions: 923
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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