Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20142
         (769 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34990.1 68417.m04961 myb family transcription factor (MYB32)...    29   2.6  
At1g26790.1 68414.m03261 Dof-type zinc finger domain-containing ...    29   2.6  
At2g24680.1 68415.m02947 transcriptional factor B3 family protei...    29   4.5  
At3g20710.1 68416.m02621 F-box protein-related contains weak hit...    28   6.0  
At3g26744.1 68416.m03344 basix helix-loop-helix (bHLH) family pr...    28   7.9  
At1g29940.1 68414.m03658 DNA-directed RNA polymerase family prot...    28   7.9  

>At4g34990.1 68417.m04961 myb family transcription factor (MYB32)
           similar to myb DNA-binding protein GI:19052 from
           [Hordeum vulgare]
          Length = 274

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +1

Query: 160 FR*RICKASLGG*SRCNVLNA-CSTKDWSSK-IKQIDVSSTEKGFDFDGLFNFKKL 321
           +R   C+   G    C+  N  C T+D SS      D+SS+  G+DF GL N + L
Sbjct: 212 YRCSACRFGFGNGKECSCNNVKCQTEDSSSSSYSSTDISSSI-GYDFLGLNNTRVL 266


>At1g26790.1 68414.m03261 Dof-type zinc finger domain-containing
           protein similar to H-protein promoter binding factor-2b
           GI:3386548 from [Arabidopsis thaliana]
          Length = 396

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = +3

Query: 573 PNPAYF--PDHTSSLEPPYTFLERVEELWNIAKTLYNRWRLKEKKKVFTRMRL---DQPL 737
           PNP+++  P +     P ++ L+    L    +   +   +KE K  F R  L    Q +
Sbjct: 270 PNPSFYHMPVYWGCAIPVWSTLDTSTCLGKRTRDETSHETVKESKNAFERTSLLLESQSI 329

Query: 738 RNETEFTTNN 767
           +NET   TNN
Sbjct: 330 KNETSMATNN 339


>At2g24680.1 68415.m02947 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 851

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 445 DAVIVEWMYSDLYSGFSTVFNFHLFG 522
           DA++   ++S+LYS FS VF   LFG
Sbjct: 295 DALVTVCIFSNLYSNFSLVFISILFG 320


>At3g20710.1 68416.m02621 F-box protein-related contains weak hit to
           TIGRFAM TIGR01640 : F-box protein interaction domain;
           contains weak hit to Pfam PF00646: F-box domain
          Length = 362

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 416 NCFWIQIKRLMP*LLSGCIATCILGFQLSSTSIYLVVIAG 535
           N +W Q KR+MP    GC     LG+  SS S  ++ + G
Sbjct: 125 NPYWGQTKRIMPRPPFGCFDRYALGYDKSSGSHKILRLFG 164


>At3g26744.1 68416.m03344 basix helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 494

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 519 WSSSLEPHPMILRLIDSLPNPAYF 590
           W SS +PHP  L+++ + P+  YF
Sbjct: 47  WFSSNQPHPQDLQMLQNQPDFRYF 70


>At1g29940.1 68414.m03658 DNA-directed RNA polymerase family protein
           similar to SP|P22138 DNA-directed RNA polymerase I 135
           kDa polypeptide (EC 2.7.7.6) (RNA polymerase I subunit
           2) {Saccharomyces cerevisiae}; contains Pfam profiles
           PF04563; RNA polymerase beta subunit, PF04560: RNA
           polymerase Rpb2 domain 7, PF04561: RNA polymerase Rpb2
           domain 2, PF04565: RNA polymerase Rpb2 domain 3,
           PF00562: RNA polymerase Rpb2 domain 6
          Length = 1114

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +1

Query: 232 KDWSSKIKQI---DVSSTEKGFDFDGLFNFKKLINK 330
           ++W  K K +   ++ +T   F F+ L + KKLINK
Sbjct: 329 EEWLRKCKSLLKDELDNTNSKFSFESLADVKKLINK 364


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,812,235
Number of Sequences: 28952
Number of extensions: 334449
Number of successful extensions: 904
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)