Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20137
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24350.1 68418.m02870 expressed protein weak similarity to ne...    28   7.0  
At4g09340.1 68417.m01543 SPla/RYanodine receptor (SPRY) domain-c...    28   7.0  

>At5g24350.1 68418.m02870 expressed protein weak similarity to
           neuroblastoma-amplified protein [Homo sapiens]
           GI:4337460
          Length = 2376

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +3

Query: 240 LNLTNYKSYTAASRRRAWGMWIFKIIKYPLLKFSSTLHFFNGRLASNIEL*KYFTKKIIA 419
           L LTN+  +  +  + +  +W F++ +  LL+FS  L  + G     I + +Y  +    
Sbjct: 517 LYLTNHYVFAKSEDQESQQLWEFRLARLRLLQFSERLDTYLG-----ISMGRYSVQDYRK 571

Query: 420 FRDN 431
           FR N
Sbjct: 572 FRSN 575


>At4g09340.1 68417.m01543 SPla/RYanodine receptor (SPRY)
           domain-containing protein low similarity to RanBPM [Homo
           sapiens] GI:15080674; contains Pfam profile PF00622:
           SPRY domain
          Length = 447

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 262 RIPQHPGGELGVCGY 306
           RI +HPG EL  CGY
Sbjct: 104 RIARHPGWELNTCGY 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,115,419
Number of Sequences: 28952
Number of extensions: 236564
Number of successful extensions: 431
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)