Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20136
(781 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g10180.1 68416.m01219 kinesin motor protein-related similar t... 33 0.21
At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contai... 31 0.65
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 31 0.86
At5g53430.1 68418.m06640 PHD finger family protein / SET domain-... 31 1.1
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 30 1.5
At1g04940.1 68414.m00491 tic20 family protein similar to Tic20 (... 30 2.0
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 29 3.5
At5g42490.1 68418.m05172 kinesin motor family protein contains P... 29 3.5
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ... 29 3.5
At1g23230.1 68414.m02906 expressed protein 29 3.5
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi... 29 4.6
At3g57780.1 68416.m06436 expressed protein 28 6.0
At3g28770.1 68416.m03591 expressed protein 28 8.0
At2g02720.1 68415.m00214 pectate lyase family protein similar to... 28 8.0
At1g02230.1 68414.m00161 no apical meristem (NAM) family protein... 28 8.0
>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
centromere protein E GB:4502781 [Homo sapiens]
Length = 1348
Score = 33.1 bits (72), Expect = 0.21
Identities = 23/65 (35%), Positives = 31/65 (47%)
Frame = +1
Query: 277 SSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDVIE 456
S L H E EK+ + + KEK E TKLK TE+ KNS+ K +E
Sbjct: 794 SDLLSHIECLEKD-IGSLSSSSLAKEKENLRKDFEK-TKTKLKDTESKLKNSMQDKTKLE 851
Query: 457 QEKSA 471
EK++
Sbjct: 852 AEKAS 856
>At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contains
Pfam domains PF00628: PHD-finger and PF00855: PWWP
domain; identical to cDNA trithorax 3 (ATX3) partial cds
GI:15217142
Length = 799
Score = 31.5 bits (68), Expect = 0.65
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = -3
Query: 722 LIICIRSVYGVHSLFIGVKRDLR*DLNKIRGCCTPPLPRQCCHC 591
+IIC R VH GV + R C TP + R CC C
Sbjct: 507 MIICNRCQVAVHQECYGVSKSQDLTSWVCRACETPDIERDCCLC 550
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 31.1 bits (67), Expect = 0.86
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Frame = +2
Query: 17 RVAECTNLLSPSSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNE 196
R+A C P ++ F + S S + SL+D+ ++ +LK L+G + VDTN
Sbjct: 513 RIASCKQR-HPKWQRVE-FENSDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN- 569
Query: 197 KIVLPSAEDVATEK---TQKSLSTVSR 268
AED A E+ +K++ST+++
Sbjct: 570 ----LDAEDRAAERKAEVEKAVSTLAQ 592
>At5g53430.1 68418.m06640 PHD finger family protein / SET
domain-containing protein (TX5) contains Pfam domain,
PF00628: PHD-finger and PF00856: SET domain; identical
to cDNA trithorax 5 (TX5) partial cds GI:16118406
Length = 1043
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 731 YYTLIICIRSVYGVHSLFIGVKRDLR*DLNKI-RGCCTPPLPRQCCHC 591
Y +IIC R VH G R++R + + + C TP + R+CC C
Sbjct: 621 YNKIIICNRCQIAVHQECYGT-RNVRDFTSWVCKACETPEIKRECCLC 667
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 283 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD-PTKLKHTETCEKNSLPTKDVIEQ 459
Q+K + +E+N K+ +E + + K +E + +LK T E+N ++ IE
Sbjct: 778 QIKERQEREENERRAKEVLEQAENERKLKEALEQKENERRLKETREKEENKKKLREAIEL 837
Query: 460 EK 465
E+
Sbjct: 838 EE 839
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 265 EKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD-PTKLKHTETCEKNSLPT 441
+K + +LK T +E+N ++AIE E+++ + + E + +LK E+ +
Sbjct: 811 QKENERRLKETREKEENKKKLREAIELEEKEKRLIEAFERAEIERRLKEDLEQEEMRMRL 870
Query: 442 KDVIEQEK 465
++ E+E+
Sbjct: 871 QEAKERER 878
>At1g04940.1 68414.m00491 tic20 family protein similar to Tic20
(GI:3769673) [Pisum sativum]; contains TIGRFAM IGR00994:
chloroplast protein import component, Tic20 family
Length = 501
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -2
Query: 708 SIGLWRPLAVYWRKA*LTLGFE*NPGLLYAAIAQAVLPLYKNKNKT-CNGRRKSI*LTSI 532
++ W PL VYW K + L+ + L +K +T C G+RK + +
Sbjct: 203 TVSKWMPLGVYWGKFGMHFWTAVAFAYLFTVLESIRCALAAHKQRTGCTGKRKFTDVVPL 262
Query: 531 LKYGD 517
K+ D
Sbjct: 263 SKFDD 267
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
domain PF04931: DNA polymerase V
Length = 1306
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 295 TETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 390
TE E + LPD ++ +K K + +N + N+D
Sbjct: 12 TELVENDNLPDSSIVKKKKSKTEKMNTVANYD 43
>At5g42490.1 68418.m05172 kinesin motor family protein contains Pfam
domain, PF00225: Kinesin motor domain
Length = 1087
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +1
Query: 262 IEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPT 441
+E +S + + E Q KN ++ + K+ + LN EN ++ + TE CE NSLP
Sbjct: 563 VEAQESQESVNEEEQMKNE--ERKMSPSTKQAEQCLNKEENAQ-SEQQSTEDCELNSLPI 619
Query: 442 KDVIE 456
+ E
Sbjct: 620 NNQSE 624
>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 692
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Frame = -3
Query: 632 GCCTPPLPRQCCH-CTKTKIKLVMDD--ANRSDLHQY*NTAILANTFASNCYKVVVQADF 462
G C P+ + C+K+ ++ + AN S ++ L++ C++ ++ DF
Sbjct: 392 GACVLPIGSYTFYKCSKSNCSFILHEKCANISKKKRH----FLSSEPLILCFESIIDDDF 447
Query: 461 SCSMT--SFVGSEFFSHVSVCFSLVGSKFSMPF 369
C F F+S V F L+ S +MPF
Sbjct: 448 LCRACYQMFCEGFFYSSKGVNFDLICSSITMPF 480
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 445 PLWGASSSRTFPCASA*WDRSSRC-RSGICSFPSP 344
PL+G + + P S W+R+ RC R I + PSP
Sbjct: 393 PLYGEDLAMSIPKGSLDWERAVRCIRHAIRTTPSP 427
>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 786
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +2
Query: 86 SVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQKS 250
S+ + + DLPK+ + SQ E + S +DT E ++ P+AED E S
Sbjct: 78 SLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIVSS 135
>At3g57780.1 68416.m06436 expressed protein
Length = 670
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 274 DSSQLKHTETQEK-NPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCE 423
DSS+ TE +E N L D E EKE++K L+ I + + ETCE
Sbjct: 72 DSSE--KTEKEETINGLACDDEDEEEKEESKELDAIAHEKTDSVSSPETCE 120
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 289 KHTETQEKNPLPD-KDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKD 447
K +E EK + KDA E + NK L+ EN D K + E +++ +KD
Sbjct: 780 KESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNKEDKEESKD 833
>At2g02720.1 68415.m00214 pectate lyase family protein similar to
pectate lyase P59 SP:P15722 from [Lycopersicon
esculentum]
Length = 455
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = +1
Query: 289 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDVIEQE 462
K +E P P+ + + EK+ FLNG K KN +P K I +
Sbjct: 375 KQVTKREYTPYPEWKSWNWQSEKDYFLNGAYFVQSGKANAWSATPKNPIPRKFAIRPQ 432
>At1g02230.1 68414.m00161 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) protein
Length = 579
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 592 QWQHCLGNGGVQQPRILFKS*RKSRFTPINS 684
+W+ L N G +Q I+F +S +TP+ S
Sbjct: 225 EWKTWLNNDGDEQRNIMFMQDHRSDYTPLKS 255
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,115,629
Number of Sequences: 28952
Number of extensions: 335948
Number of successful extensions: 1138
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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