Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20134
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40480.1 68418.m04909 expressed protein ; expression supporte...    28   5.2  
At3g57980.1 68416.m06462 DNA-binding bromodomain-containing prot...    28   5.2  
At2g15890.1 68415.m01821 expressed protein                             28   6.9  
At1g52960.1 68414.m05990 hypothetical protein very low similarit...    27   9.2  

>At5g40480.1 68418.m04909 expressed protein ; expression supported
           by MPSS
          Length = 1919

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 556 VVRCALFMDEIAVMQPKLQILGVTIIVDLDGVEHQTREAFD 678
           V+RC +F+D  +    ++QI   +I +DLDG+      AFD
Sbjct: 108 VIRCKVFIDNFS----RIQIFHNSIKLDLDGLSMLRVRAFD 144


>At3g57980.1 68416.m06462 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 632

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 199 TLKSTPRRIVTNSLTLGINNRGATPHG 279
           T K    R V  SL  GI+NRG +P+G
Sbjct: 473 TAKKVGSRNVKTSLNAGISNRGRSPNG 499


>At2g15890.1 68415.m01821 expressed protein
          Length = 203

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -2

Query: 602 GCITAISSMNRAQRTTSSIGTALGSQRPNLIKLFFHFPD 486
           GC+  ++SM +  +T + +     S R   + L  H PD
Sbjct: 120 GCLHGVASMEKDNKTKNGLHVGEESDREKGMNLHIHIPD 158


>At1g52960.1 68414.m05990 hypothetical protein very low similarity
           to SP|Q9UUA2 DNA repair and recombination protein pif1,
           mitochondrial precursor {Schizosaccharomyces pombe}
          Length = 996

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = +2

Query: 233 IP*H*A*IIEELRRMVRERGECI------PRRVDDAYCLRFL 340
           IP H     +E + M+RERG  I      PR ++DAY LR L
Sbjct: 334 IPNHFTWNSKEKKFMIRERGFAIGRINFVPRTIEDAYYLRIL 375


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,216,277
Number of Sequences: 28952
Number of extensions: 320676
Number of successful extensions: 723
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)