Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20131
         (822 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa...    29   2.8  
At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related conta...    29   4.9  
At1g17030.1 68414.m02069 expressed protein                             28   8.6  
At1g06160.1 68414.m00647 ethylene-responsive factor, putative si...    28   8.6  

>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
           family protein predicted proteins, Arabidopsis thaliana
           ; contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 411

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 24/66 (36%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
 Frame = +3

Query: 234 IKKKSGLESKAQLPTKRRRC-----------SPFAASPSTSPGLKTSESKPSSFGESVSA 380
           I +   L+ KA LP   RR             P  ASP TSP  K   S PSS    +S 
Sbjct: 66  ILRNLSLKRKASLPNYERRLLLSPSVSETSEKPLVASPITSPYWKRCLSLPSSNSAKLSL 125

Query: 381 PVKITP 398
            V  TP
Sbjct: 126 VVSTTP 131


>At5g60760.1 68418.m07623 2-phosphoglycerate kinase-related contains
           weak similarity to 2-phosphoglycerate kinase (GI:467751)
           [Methanothermus fervidus]
          Length = 738

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/71 (25%), Positives = 33/71 (46%)
 Frame = +3

Query: 204 WA*KENGVCYIKKKSGLESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAP 383
           WA   +   Y+   +  ESKA+    ++  S        S G K   ++ +  G + + P
Sbjct: 224 WASTYHAGEYLDPVAVAESKARRRRAKKMDSIEDEKAKASEGGKAKNTQQTDVGSTKNTP 283

Query: 384 VKITPERMAQE 416
           V ++P++MA E
Sbjct: 284 VLLSPKQMAVE 294


>At1g17030.1 68414.m02069 expressed protein
          Length = 502

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 427 RLNDCIDVDSCAWPTALLHHAHHQVDPRD 513
           R+ DC D+D+ ++P  ++    H+VD RD
Sbjct: 77  RMADCFDIDNSSFPVKII----HKVDERD 101


>At1g06160.1 68414.m00647 ethylene-responsive factor, putative
           similar to ethylene response factor 1 GB:AAD03544
           GI:4128208 from [Arabidopsis thaliana]
          Length = 244

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +3

Query: 216 ENGVCYIKKKSGLESKAQLPTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKIT 395
           E+ V  +K+K  + ++ +   K    S   +SPS+S    +S S  S    S    V +T
Sbjct: 159 ESPVIALKRKHSMRNRPRGKKKSSSSSTLTSSPSSSSSYSSSSSSSSLSSRSRKQSVVMT 218

Query: 396 PE 401
            E
Sbjct: 219 QE 220


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,007,648
Number of Sequences: 28952
Number of extensions: 409264
Number of successful extensions: 1150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)