Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20130
(414 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 126 8e-30
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 126 8e-30
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 125 1e-29
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 125 1e-29
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 125 1e-29
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 124 2e-29
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 124 2e-29
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 124 2e-29
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 122 1e-28
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 62 1e-10
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 62 1e-10
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 62 1e-10
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 62 1e-10
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 62 1e-10
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 62 1e-10
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 59 1e-09
At2g31580.1 68415.m03858 expressed protein contains Pfam profi... 31 0.23
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 31 0.41
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 30 0.54
At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding ... 29 0.94
At5g24010.1 68418.m02821 protein kinase family protein contains ... 29 1.2
At4g22070.1 68417.m03192 WRKY family transcription factor identi... 29 1.2
At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein ... 29 1.6
At1g45201.2 68414.m05185 lipase class 3 family protein Since thi... 29 1.6
At2g47830.2 68415.m05970 cation efflux family protein / metal to... 27 3.8
At2g47830.1 68415.m05969 cation efflux family protein / metal to... 27 3.8
At5g20860.1 68418.m02477 pectinesterase family protein contains ... 27 5.0
At5g11550.1 68418.m01347 expressed protein 27 5.0
At2g45490.1 68415.m05658 protein kinase, putative contains prote... 27 5.0
At3g11560.3 68416.m01412 expressed protein 27 6.6
At3g11560.2 68416.m01411 expressed protein 27 6.6
At3g11560.1 68416.m01410 expressed protein 27 6.6
At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family pr... 27 6.6
At1g62300.1 68414.m07028 WRKY family transcription factor simila... 27 6.6
At1g56080.1 68414.m06439 expressed protein 27 6.6
At4g39160.1 68417.m05546 myb family transcription factor contain... 26 8.7
At1g75700.1 68414.m08794 abscisic acid-responsive HVA22 family p... 26 8.7
At1g50770.1 68414.m05710 hypothetical protein 26 8.7
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 126 bits (303), Expect = 8e-30
Identities = 59/84 (70%), Positives = 63/84 (75%)
Frame = +3
Query: 3 NNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREE 182
NNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ KIREE
Sbjct: 99 NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158
Query: 183 YPDRIMNTYSVVPSPKVSDTVVEP 254
YPDR+M T+SV PSPKVSDTVVEP
Sbjct: 159 YPDRMMMTFSVFPSPKVSDTVVEP 182
Score = 82.6 bits (195), Expect = 9e-17
Identities = 36/44 (81%), Positives = 39/44 (88%)
Frame = +2
Query: 257 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNH 388
NATLSVHQLVEN DE +DNEALYDICFRTLKL+ PT+GDLNH
Sbjct: 184 NATLSVHQLVENADECMVLDNEALYDICFRTLKLANPTFGDLNH 227
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 126 bits (303), Expect = 8e-30
Identities = 59/84 (70%), Positives = 63/84 (75%)
Frame = +3
Query: 3 NNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREE 182
NNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ KIREE
Sbjct: 99 NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158
Query: 183 YPDRIMNTYSVVPSPKVSDTVVEP 254
YPDR+M T+SV PSPKVSDTVVEP
Sbjct: 159 YPDRMMMTFSVFPSPKVSDTVVEP 182
Score = 84.2 bits (199), Expect = 3e-17
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +2
Query: 257 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNH 388
NATLSVHQLVEN DE +DNEALYDICFRTLKLSTP++GDLNH
Sbjct: 184 NATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNH 227
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 125 bits (302), Expect = 1e-29
Identities = 59/84 (70%), Positives = 63/84 (75%)
Frame = +3
Query: 3 NNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREE 182
NNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ KIREE
Sbjct: 99 NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158
Query: 183 YPDRIMNTYSVVPSPKVSDTVVEP 254
YPDR+M T+SV PSPKVSDTVVEP
Sbjct: 159 YPDRMMLTFSVFPSPKVSDTVVEP 182
Score = 83.0 bits (196), Expect = 7e-17
Identities = 36/44 (81%), Positives = 40/44 (90%)
Frame = +2
Query: 257 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNH 388
NATLSVHQLVEN DE +DNEALYDICFRTLKL+TP++GDLNH
Sbjct: 184 NATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNH 227
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 125 bits (302), Expect = 1e-29
Identities = 59/84 (70%), Positives = 63/84 (75%)
Frame = +3
Query: 3 NNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREE 182
NNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ KIREE
Sbjct: 99 NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158
Query: 183 YPDRIMNTYSVVPSPKVSDTVVEP 254
YPDR+M T+SV PSPKVSDTVVEP
Sbjct: 159 YPDRMMLTFSVFPSPKVSDTVVEP 182
Score = 83.0 bits (196), Expect = 7e-17
Identities = 36/44 (81%), Positives = 40/44 (90%)
Frame = +2
Query: 257 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNH 388
NATLSVHQLVEN DE +DNEALYDICFRTLKL+TP++GDLNH
Sbjct: 184 NATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNH 227
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 125 bits (302), Expect = 1e-29
Identities = 59/84 (70%), Positives = 63/84 (75%)
Frame = +3
Query: 3 NNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREE 182
NNWAKGHYTEGAEL+DSVLDVVRKEAE+CDCLQGFQ KIREE
Sbjct: 99 NNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158
Query: 183 YPDRIMNTYSVVPSPKVSDTVVEP 254
YPDR+M T+SV PSPKVSDTVVEP
Sbjct: 159 YPDRMMLTFSVFPSPKVSDTVVEP 182
Score = 83.0 bits (196), Expect = 7e-17
Identities = 36/44 (81%), Positives = 40/44 (90%)
Frame = +2
Query: 257 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNH 388
NATLSVHQLVEN DE +DNEALYDICFRTLKL+TP++GDLNH
Sbjct: 184 NATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNH 227
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 124 bits (299), Expect = 2e-29
Identities = 58/84 (69%), Positives = 63/84 (75%)
Frame = +3
Query: 3 NNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREE 182
NNWAKGHYTEGAEL+D+VLDVVRKEAE+CDCLQGFQ KIREE
Sbjct: 99 NNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158
Query: 183 YPDRIMNTYSVVPSPKVSDTVVEP 254
YPDR+M T+SV PSPKVSDTVVEP
Sbjct: 159 YPDRMMLTFSVFPSPKVSDTVVEP 182
Score = 83.0 bits (196), Expect = 7e-17
Identities = 36/44 (81%), Positives = 40/44 (90%)
Frame = +2
Query: 257 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNH 388
NATLSVHQLVEN DE +DNEALYDICFRTLKL+TP++GDLNH
Sbjct: 184 NATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNH 227
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 124 bits (299), Expect = 2e-29
Identities = 58/84 (69%), Positives = 63/84 (75%)
Frame = +3
Query: 3 NNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREE 182
NNWAKGHYTEGAEL+D+VLDVVRKEAE+CDCLQGFQ KIREE
Sbjct: 100 NNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 159
Query: 183 YPDRIMNTYSVVPSPKVSDTVVEP 254
YPDR+M T+SV PSPKVSDTVVEP
Sbjct: 160 YPDRMMLTFSVFPSPKVSDTVVEP 183
Score = 84.2 bits (199), Expect = 3e-17
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +2
Query: 257 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNH 388
NATLSVHQLVEN DE +DNEALYDICFRTLKLSTP++GDLNH
Sbjct: 185 NATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNH 228
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 124 bits (299), Expect = 2e-29
Identities = 58/84 (69%), Positives = 63/84 (75%)
Frame = +3
Query: 3 NNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREE 182
NNWAKGHYTEGAEL+D+VLDVVRKEAE+CDCLQGFQ KIREE
Sbjct: 100 NNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 159
Query: 183 YPDRIMNTYSVVPSPKVSDTVVEP 254
YPDR+M T+SV PSPKVSDTVVEP
Sbjct: 160 YPDRMMLTFSVFPSPKVSDTVVEP 183
Score = 84.2 bits (199), Expect = 3e-17
Identities = 37/44 (84%), Positives = 40/44 (90%)
Frame = +2
Query: 257 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNH 388
NATLSVHQLVEN DE +DNEALYDICFRTLKLSTP++GDLNH
Sbjct: 185 NATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNH 228
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 122 bits (293), Expect = 1e-28
Identities = 58/84 (69%), Positives = 62/84 (73%)
Frame = +3
Query: 3 NNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREE 182
NNWAKGHYTEGAEL+DSVLDVVRKEAE+ DCLQGFQ KIREE
Sbjct: 99 NNWAKGHYTEGAELIDSVLDVVRKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158
Query: 183 YPDRIMNTYSVVPSPKVSDTVVEP 254
YPDR+M T+SV PSPKVSDTVVEP
Sbjct: 159 YPDRMMMTFSVFPSPKVSDTVVEP 182
Score = 82.6 bits (195), Expect = 9e-17
Identities = 36/44 (81%), Positives = 39/44 (88%)
Frame = +2
Query: 257 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNH 388
NATLSVHQLVEN DE +DNEALYDICFRTLKL+ PT+GDLNH
Sbjct: 184 NATLSVHQLVENADECMVLDNEALYDICFRTLKLANPTFGDLNH 227
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 62.5 bits (145), Expect = 1e-10
Identities = 32/84 (38%), Positives = 45/84 (53%)
Frame = +3
Query: 3 NNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREE 182
NN+A+GHYT G E+VD LD VRK A++C LQGF ++ +
Sbjct: 101 NNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160
Query: 183 YPDRIMNTYSVVPSPKVSDTVVEP 254
Y + +++ PSP+VS VVEP
Sbjct: 161 YGKKSKLGFTIYPSPQVSTAVVEP 184
Score = 55.2 bits (127), Expect = 2e-08
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +2
Query: 257 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLN 385
N+ LS H L+E+TD +DNEA+YDIC R+L + PTY +LN
Sbjct: 186 NSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLN 228
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 62.5 bits (145), Expect = 1e-10
Identities = 32/84 (38%), Positives = 45/84 (53%)
Frame = +3
Query: 3 NNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREE 182
NN+A+GHYT G E+VD LD VRK A++C LQGF ++ +
Sbjct: 101 NNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160
Query: 183 YPDRIMNTYSVVPSPKVSDTVVEP 254
Y + +++ PSP+VS VVEP
Sbjct: 161 YGKKSKLGFTIYPSPQVSTAVVEP 184
Score = 55.2 bits (127), Expect = 2e-08
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +2
Query: 257 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLN 385
N+ LS H L+E+TD +DNEA+YDIC R+L + PTY +LN
Sbjct: 186 NSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLN 228
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 62.5 bits (145), Expect = 1e-10
Identities = 32/84 (38%), Positives = 46/84 (54%)
Frame = +3
Query: 3 NNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREE 182
NN+A+GHYT G E+VD LD +RK A++C LQGF ++ +
Sbjct: 101 NNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160
Query: 183 YPDRIMNTYSVVPSPKVSDTVVEP 254
Y + ++V PSP+VS +VVEP
Sbjct: 161 YGKKSKLGFTVYPSPQVSTSVVEP 184
Score = 56.0 bits (129), Expect = 9e-09
Identities = 23/43 (53%), Positives = 32/43 (74%)
Frame = +2
Query: 257 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLN 385
N+ LS H L+E+TD + +DNEA+YDIC R+L + PTY +LN
Sbjct: 186 NSVLSTHSLLEHTDVSILLDNEAIYDICRRSLNIERPTYTNLN 228
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 62.5 bits (145), Expect = 1e-10
Identities = 32/84 (38%), Positives = 46/84 (54%)
Frame = +3
Query: 3 NNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREE 182
NN+A+GHYT G E+VD LD +RK A++C LQGF ++ +
Sbjct: 101 NNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160
Query: 183 YPDRIMNTYSVVPSPKVSDTVVEP 254
Y + ++V PSP+VS +VVEP
Sbjct: 161 YGKKSKLGFTVYPSPQVSTSVVEP 184
Score = 56.0 bits (129), Expect = 9e-09
Identities = 23/43 (53%), Positives = 32/43 (74%)
Frame = +2
Query: 257 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLN 385
N+ LS H L+E+TD + +DNEA+YDIC R+L + PTY +LN
Sbjct: 186 NSVLSTHSLLEHTDVSILLDNEAIYDICRRSLNIERPTYTNLN 228
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 62.5 bits (145), Expect = 1e-10
Identities = 32/84 (38%), Positives = 46/84 (54%)
Frame = +3
Query: 3 NNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREE 182
NN+A+GHYT G E+VD LD +RK A++C LQGF ++ +
Sbjct: 101 NNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160
Query: 183 YPDRIMNTYSVVPSPKVSDTVVEP 254
Y + ++V PSP+VS +VVEP
Sbjct: 161 YGKKSKLGFTVYPSPQVSTSVVEP 184
Score = 56.0 bits (129), Expect = 9e-09
Identities = 23/43 (53%), Positives = 32/43 (74%)
Frame = +2
Query: 257 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLN 385
N+ LS H L+E+TD + +DNEA+YDIC R+L + PTY +LN
Sbjct: 186 NSVLSTHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYTNLN 228
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 62.5 bits (145), Expect = 1e-10
Identities = 32/84 (38%), Positives = 46/84 (54%)
Frame = +3
Query: 3 NNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREE 182
NN+A+GHYT G E+VD LD +RK A++C LQGF ++ +
Sbjct: 101 NNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160
Query: 183 YPDRIMNTYSVVPSPKVSDTVVEP 254
Y + ++V PSP+VS +VVEP
Sbjct: 161 YGKKSKLGFTVYPSPQVSTSVVEP 184
Score = 56.0 bits (129), Expect = 9e-09
Identities = 23/43 (53%), Positives = 32/43 (74%)
Frame = +2
Query: 257 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLN 385
N+ LS H L+E+TD + +DNEA+YDIC R+L + PTY +LN
Sbjct: 186 NSVLSTHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYTNLN 228
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 59.3 bits (137), Expect = 1e-09
Identities = 29/84 (34%), Positives = 46/84 (54%)
Frame = +3
Query: 3 NNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREE 182
NN+A+GHYT G E+VD+ L+ +RK A++C LQGF ++ +
Sbjct: 101 NNFARGHYTVGREIVDTCLERLRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160
Query: 183 YPDRIMNTYSVVPSPKVSDTVVEP 254
+ + +++ PSP+VS VVEP
Sbjct: 161 FGKKSKLGFTIYPSPQVSTAVVEP 184
Score = 56.0 bits (129), Expect = 9e-09
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +2
Query: 257 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLN 385
N+ LS H L+E+TD +DNEA+YDIC R+L + PTY +LN
Sbjct: 186 NSVLSTHSLLEHTDVVVLLDNEAIYDICRRSLDIERPTYSNLN 228
>At2g31580.1 68415.m03858 expressed protein contains Pfam profile:
PF04446 family of unknown function (DUF549)
Length = 567
Score = 31.5 bits (68), Expect = 0.23
Identities = 23/71 (32%), Positives = 32/71 (45%)
Frame = +3
Query: 42 LVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP 221
+++SV VVRKEAE+C+CLQ F RE D + Y V
Sbjct: 1 MINSV-GVVRKEAENCNCLQVF--FVSGSFKVDSVEAKKKEENFRETLRDMANSKYEYVK 57
Query: 222 SPKVSDTVVEP 254
S ++ D V+ P
Sbjct: 58 SFELEDEVMLP 68
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 30.7 bits (66), Expect = 0.41
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 257 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLN 385
N+ L++ +L N D +DN AL I L L+ PT+ N
Sbjct: 187 NSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLTNPTFAQTN 229
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 30.3 bits (65), Expect = 0.54
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 257 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLN 385
N+ L++ +L N D +DN AL I L L+ PT+ N
Sbjct: 187 NSLLTLKRLTLNADCVVVLDNTALGRIAVERLHLTNPTFAQTN 229
>At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 656
Score = 29.5 bits (63), Expect = 0.94
Identities = 18/46 (39%), Positives = 19/46 (41%)
Frame = -1
Query: 159 GGCPYRNRCRRRASVSVGIPGGNHTIPLPFERRLKLNRRAQHPPCS 22
G CP R R S G GG P+P RR KL P CS
Sbjct: 32 GSCPRRRIQERFKSEQGGGGGGGDDFPVPVTRR-KLRAEPNCPRCS 76
>At5g24010.1 68418.m02821 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 824
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 124 SECVSWNPWRQSHDSASFRTTSKTESTSSAPSV*CPLAQL 5
SE W P R+ S++ RTT +T S+S ++ A+L
Sbjct: 443 SESTGWTPLRRFRGSSNSRTTERTVSSSGYHTLRISFAEL 482
>At4g22070.1 68417.m03192 WRKY family transcription factor identical
to WRKY transcription factor 31 (WRKY31) GI:15990589
from [Arabidopsis thaliana]
Length = 538
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Frame = -1
Query: 159 GGCPYRN---RCRRRASVSVGIPGGNHTIPLP 73
GGCP R RC S+ + GNH PLP
Sbjct: 326 GGCPVRKQVQRCAEDRSILITTYEGNHNHPLP 357
>At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 304
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 117 VSVGIPGGNHTIPLPFERRLKLNRRAQHPPCSVPWPSC 4
VS G+PG HT P ++ ++ +++ P S PW SC
Sbjct: 136 VSSGLPGKQHTSSSPPSFVVEPSKNSKYIPSSSPW-SC 172
>At1g45201.2 68414.m05185 lipase class 3 family protein Since this
genomic sequence region is unfinished, the annotated
gene may be missing a stop codon or start codon
Length = 479
Score = 28.7 bits (61), Expect = 1.6
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = -1
Query: 195 FCQGTLL*FWR*GGCPYRNRCRRRASVSVGI--PGGNHTIPLPFERRLKLNRRAQHPPCS 22
F + +L FW+ G Y+ R VGI PGG++ P + +L + PP +
Sbjct: 412 FIRSFILQFWK--GDEYKENWLMRFVRVVGIVFPGGSNHFPFDYVNSTRLGGLVRPPPTT 469
Query: 21 VP 16
P
Sbjct: 470 TP 471
>At2g47830.2 68415.m05970 cation efflux family protein / metal
tolerance protein, putative (MTPc1) member of the cation
diffusion facilitator (CDF) family, or cation efflux
(CE) family, PMID:11500563
Length = 468
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 137 RFRYGHPPHLQNQRRVP*QNNEHIFSCTIT*SVGHS 244
R+ +GHP H Q Q + P + E IF +T +G S
Sbjct: 54 RWHFGHPDHHQ-QYQKPGEEGEKIFRLGLTADIGLS 88
>At2g47830.1 68415.m05969 cation efflux family protein / metal
tolerance protein, putative (MTPc1) member of the cation
diffusion facilitator (CDF) family, or cation efflux
(CE) family, PMID:11500563
Length = 471
Score = 27.5 bits (58), Expect = 3.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 137 RFRYGHPPHLQNQRRVP*QNNEHIFSCTIT*SVGHS 244
R+ +GHP H Q Q + P + E IF +T +G S
Sbjct: 54 RWHFGHPDHHQ-QYQKPGEEGEKIFRLGLTADIGLS 88
>At5g20860.1 68418.m02477 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 512
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 257 NATLSVHQLVENTDETYCIDNEALYDICFRTLKLST 364
++++ +LV D TY + + ++ D C R +K+ST
Sbjct: 85 SSSMGSSKLVSLEDSTYTLPSPSVSDSCERLMKMST 120
>At5g11550.1 68418.m01347 expressed protein
Length = 314
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 228 KVSDTVVEPTTPHFQFIN*LKTQTKPTVSTTRLSTISASAR*NYPH 365
+ + +V+ PT+PH Q T T + S++ ST + + +PH
Sbjct: 25 RCTQSVLSPTSPHQQQPRRKATTTSSSSSSSSTSTSQSFTQWRFPH 70
>At2g45490.1 68415.m05658 protein kinase, putative contains protein
kinase domain, Pfam:PF00069; similar to protein kinase
p46XlEg22 [Xenopus laevis] gi|609280|emb|CAA78914
Length = 288
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 278 QLVENTDETYCIDNEALYDICFRTLKLSTP 367
++VEN D Y +DN L +C+ L + P
Sbjct: 187 EMVENRDHDYAVDNWTLGILCYEFLYGNPP 216
>At3g11560.3 68416.m01412 expressed protein
Length = 872
Score = 26.6 bits (56), Expect = 6.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 405 TCQRHQWFRSPYVGVDSFSVRKQIS*RASL 316
T R WF S ++G D ++ K +S +ASL
Sbjct: 133 TPSRFSWFPSTWLGADKYAWVKTLSYQASL 162
>At3g11560.2 68416.m01411 expressed protein
Length = 872
Score = 26.6 bits (56), Expect = 6.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 405 TCQRHQWFRSPYVGVDSFSVRKQIS*RASL 316
T R WF S ++G D ++ K +S +ASL
Sbjct: 133 TPSRFSWFPSTWLGADKYAWVKTLSYQASL 162
>At3g11560.1 68416.m01410 expressed protein
Length = 619
Score = 26.6 bits (56), Expect = 6.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 405 TCQRHQWFRSPYVGVDSFSVRKQIS*RASL 316
T R WF S ++G D ++ K +S +ASL
Sbjct: 133 TPSRFSWFPSTWLGADKYAWVKTLSYQASL 162
>At2g46810.1 68415.m05841 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 371
Score = 26.6 bits (56), Expect = 6.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 248 RTDNATLSVHQLVENTDETYCIDNE 322
R N + +HQ V+ DE +C+D +
Sbjct: 5 RVSNQSFKLHQQVQCKDEIFCLDQK 29
>At1g62300.1 68414.m07028 WRKY family transcription factor similar
to putative DNA-binding protein GI:7268215 from
[Arabidopsis thaliana]
Length = 553
Score = 26.6 bits (56), Expect = 6.6
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Frame = -1
Query: 156 GCPYRN---RCRRRASVSVGIPGGNHTIPLP 73
GCP R RC S+ + GNH PLP
Sbjct: 342 GCPVRKQVQRCAEDRSILITTYEGNHNHPLP 372
>At1g56080.1 68414.m06439 expressed protein
Length = 310
Score = 26.6 bits (56), Expect = 6.6
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 204 TYSVVPSPKVSDTVVEPTTPHFQFIN*LKTQTKPTVSTTRLSTISASAR 350
+YS SPK+ PT+ H+ T + +V+ + + S SAR
Sbjct: 193 SYSAASSPKLFSGAASPTSSHYDIRMWSSTSQQSSVANSPPRSHSVSAR 241
>At4g39160.1 68417.m05546 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 545
Score = 26.2 bits (55), Expect = 8.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 195 IMNTYSVVPSPKVSDTVVEPTTPHF 269
+ +T + P P++ +TVVE PH+
Sbjct: 128 VQHTGKLQPKPRLLETVVEEPEPHY 152
>At1g75700.1 68414.m08794 abscisic acid-responsive HVA22 family
protein weak similarity to SP|Q00765 Polyposis locus
protein 1 (TB2 protein) {Homo sapiens}; contains Pfam
profile PF03134: TB2/DP1, HVA22 family
Length = 166
Score = 26.2 bits (55), Expect = 8.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 338 CFRTLKLSTPTYGDLNHWCR 397
CF+T++L+ P L WC+
Sbjct: 12 CFKTVELNKPEIQQLQFWCQ 31
>At1g50770.1 68414.m05710 hypothetical protein
Length = 632
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -1
Query: 159 GGCPYRNRCRRRASVSVGIPGGNHTIPLPFE 67
G + RC G GGN+T+ PF+
Sbjct: 426 GSQGHEQRCEENGEEEAGSKGGNNTVLSPFD 456
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,845,852
Number of Sequences: 28952
Number of extensions: 161672
Number of successful extensions: 473
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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