Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20122
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]...    28   4.6  
At2g41430.4 68415.m05115 dehydration-induced protein (ERD15) ide...    27   8.0  
At2g41430.2 68415.m05114 dehydration-induced protein (ERD15) ide...    27   8.0  
At2g41430.1 68415.m05113 dehydration-induced protein (ERD15) ide...    27   8.0  

>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P49361 Glycine dehydrogenase [decarboxylating] A,
           mitochondrial precursor (EC 1.4.4.2) {Flaveria
           pringlei}; contains Pfam profile PF02347: Glycine
           cleavage system P-protein
          Length = 1037

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 539 KTLVLSINYIAKRLPHPSKQNVLLFRGRNRTV 634
           K  +L+ NY+AKRL    K   +LFRG N TV
Sbjct: 854 KIAILNANYMAKRL---EKHYPVLFRGVNGTV 882


>At2g41430.4 68415.m05115 dehydration-induced protein (ERD15)
           identical to dehydration-induced protein ERD15 GI:710626
           from [Arabidopsis thaliana]
          Length = 163

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 291 GFDGNGEWIQKESRGRQPLCIVHSSPQSTNP 199
           GF  NGE ++K S  R P  IV  +  +  P
Sbjct: 114 GFGKNGEMVKKSSGNRSPRSIVEPAKYAEKP 144


>At2g41430.2 68415.m05114 dehydration-induced protein (ERD15)
           identical to dehydration-induced protein ERD15 GI:710626
           from [Arabidopsis thaliana]
          Length = 163

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 291 GFDGNGEWIQKESRGRQPLCIVHSSPQSTNP 199
           GF  NGE ++K S  R P  IV  +  +  P
Sbjct: 114 GFGKNGEMVKKSSGNRSPRSIVEPAKYAEKP 144


>At2g41430.1 68415.m05113 dehydration-induced protein (ERD15)
           identical to dehydration-induced protein ERD15 GI:710626
           from [Arabidopsis thaliana]
          Length = 163

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 291 GFDGNGEWIQKESRGRQPLCIVHSSPQSTNP 199
           GF  NGE ++K S  R P  IV  +  +  P
Sbjct: 114 GFGKNGEMVKKSSGNRSPRSIVEPAKYAEKP 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,993,776
Number of Sequences: 28952
Number of extensions: 290389
Number of successful extensions: 686
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)