Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20101
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ...    34   0.095
At4g29230.1 68417.m04181 no apical meristem (NAM) family protein...    33   0.22 
At4g34140.1 68417.m04845 D111/G-patch domain-containing protein ...    31   0.67 
At3g31540.1 68416.m04025 hypothetical protein                          31   0.67 
At2g40620.1 68415.m05010 bZIP transcription factor family protei...    30   1.5  
At5g48640.1 68418.m06015 cyclin family protein similar to SP|P55...    29   3.6  
At5g04770.1 68418.m00492 amino acid permease family protein simi...    29   3.6  
At3g58050.1 68416.m06471 expressed protein                             29   3.6  
At3g10600.1 68416.m01275 amino acid permease family protein simi...    29   3.6  
At2g43600.1 68415.m05419 glycoside hydrolase family 19 protein s...    29   3.6  
At5g52975.1 68418.m06577 expressed protein                             29   4.7  
At4g30710.2 68417.m04353 expressed protein contains Pfam domain,...    29   4.7  
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,...    29   4.7  
At2g43280.1 68415.m05380 far-red impaired responsive family prot...    29   4.7  
At4g21120.1 68417.m03054 amino acid permease family protein simi...    28   6.2  
At2g34960.1 68415.m04290 amino acid permease family protein simi...    28   6.2  
At5g07870.1 68418.m00906 transferase family protein similar to a...    28   8.3  
At2g03140.1 68415.m00267 CAAX amino terminal protease family pro...    28   8.3  
At1g55340.1 68414.m06322 expressed protein                             28   8.3  

>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein ACBF GB:U90212 GI:1899187
           from [Nicotiana tabacum]
          Length = 445

 Score = 34.3 bits (75), Expect = 0.095
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 391 NENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPEQTCQRQKQWSKA 534
           N NG+  D   PP +  TT P  + Q    P  + +Q  Q+Q+QW  A
Sbjct: 5   NNNGS-TDSVLPPTSAGTTPPPPLQQSTPPPQQQQQQQWQQQQQWMAA 51


>At4g29230.1 68417.m04181 no apical meristem (NAM) family protein
           similar to NAM family proteins GP|12751304|,
           GP|6223650|, GP|9758909 - Arabidopsis
           thaliana,PIR2:T04621
          Length = 498

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = +3

Query: 411 RRSQPTCGHIYHGSTADTPTSQHSYR*TGTDVPTSETVVQGRDKICKGTLIFSDEFEKNS 590
           R+ Q  C +   GS++   T  H    TG   P    +V G+ K CK  L+    F KN 
Sbjct: 129 RKIQTECDNNLQGSSSSGETRWHK---TGKTRPV---MVNGKQKGCKKILVLYTNFGKNR 182

Query: 591 LKDLTSW 611
             + T+W
Sbjct: 183 KPEKTNW 189


>At4g34140.1 68417.m04845 D111/G-patch domain-containing protein
           contains Pfam PF01585: G-patch domain
          Length = 418

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 319 WTYVIKDGLGYRQDNGEWTVTEFVNENGNP 408
           W Y  KDG  Y+ +NGE+   E+   + NP
Sbjct: 48  WYYCSKDGRYYKHENGEYVPLEYDESSVNP 77


>At3g31540.1 68416.m04025 hypothetical protein
          Length = 699

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 418 ANPPVATSTTGPLQIPQQASTPIVRPEQTCQRQKQWSKAAIKSVRE 555
           A+PP  T+T   + +P +  T   RP+     +K+W K   K  +E
Sbjct: 423 ADPPTETATQAVIALPARDKTLGKRPQIDTSEEKRWKKKKKKLAKE 468


>At2g40620.1 68415.m05010 bZIP transcription factor family protein
           identical to b-Zip DNA binding protein GI:2246376 from
           [Arabidopsis thaliana]; contains a bZIP transcription
           factor basic domain signature (PDOC00036)
          Length = 367

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 402 ESSRRSQPTCGHIYHGSTADTPTSQHSY 485
           +SSR + PT   + H +T++ P   HSY
Sbjct: 301 QSSRTNPPTAHQLMHHATSNAPAQSHSY 328


>At5g48640.1 68418.m06015 cyclin family protein similar to SP|P55168
           Cyclin C {Gallus gallus}; contains Pfam profile PF00134:
           Cyclin, N-terminal domain
          Length = 253

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 516 ETVVQGRDKICKGTLIFSDEFEKNSLKDLTSWGAEVRFPEEPDYPFNVY 662
           E++VQ R+ +     ++ DE+ K  LKD+   G E++  E  DY   V+
Sbjct: 99  ESIVQARNLVFYIKRLYPDEYNKYELKDIL--GMEMKVLEALDYYLVVF 145


>At5g04770.1 68418.m00492 amino acid permease family protein similar
           to cationic amino acid transporter-1 [Rattus norvegicus]
           GI:1589917; contains Pfam profile PF00324: Amino acid
           permease
          Length = 583

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 393 IDEFCYSPFAVILPISEAILDYIR 322
           +  FCY+ FAV LP++     YIR
Sbjct: 108 LSAFCYTEFAVHLPVAGGAFSYIR 131


>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 89   AQYIVPPAKLEAIYPAGLRVTVPDDGFSLFAFHG 190
            AQ + PP +L  + P   + TV +D FSLF F G
Sbjct: 1123 AQNLEPPLELNCLAPPETQ-TVNEDSFSLFHFSG 1155


>At3g10600.1 68416.m01275 amino acid permease family protein similar
           to SP|Q09143 High-affinity cationic amino acid
           transporter-1 (CAT-1) {Mus musculus}; contains Pfam
           profile PF00324: Amino acid permease
          Length = 584

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 393 IDEFCYSPFAVILPISEAILDYIR 322
           +  FCY+ FAV LP++     YIR
Sbjct: 107 LSAFCYTEFAVHLPVAGGAFSYIR 130


>At2g43600.1 68415.m05419 glycoside hydrolase family 19 protein
           similar to basic endochitinase CHB4 precursor SP:Q06209
           from [Brassica napus]
          Length = 273

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 170 SLFAFHGKLNEEMEGLESGHWSRDITKAK 256
           +L+   G++ + ++G E G+W RD TK K
Sbjct: 224 ALYLGFGEITKRVDGRECGNWRRDDTKNK 252


>At5g52975.1 68418.m06577 expressed protein
          Length = 121

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +2

Query: 38  IIILSVLVTICSAQPRAAQYIVPPAKLEAIYPAGLRVTVPDDGFSLFAFHGKLNEEMEGL 217
           I+I+S+ V I   Q   A    PP  +  I+P GL + +     SLF   G + E  + +
Sbjct: 10  ILIVSLCVAIFVTQG-VAHMQTPPTTVPGIFPPGLPIDLVKCWSSLFNVEGCVLEIAKSI 68

Query: 218 ESG 226
            SG
Sbjct: 69  FSG 71


>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 168 SRSSPFTASSTKRWKAWNRGIGPGTSLKPKRRLDVQR 278
           SR+S  ++SS  R  + +RG+ P   L P R L   R
Sbjct: 326 SRTSFLSSSSISRGMSTSRGVSPSRGLSPSRGLSPTR 362


>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 168 SRSSPFTASSTKRWKAWNRGIGPGTSLKPKRRLDVQR 278
           SR+S  ++SS  R  + +RG+ P   L P R L   R
Sbjct: 326 SRTSFLSSSSISRGMSTSRGVSPSRGLSPSRGLSPTR 362


>At2g43280.1 68415.m05380 far-red impaired responsive family protein
           / FAR1 family protein weak similarity to far-red
           impaired response protein [Arabidopsis thaliana]
           GI:5764395; contains Pfam profile PF03101: FAR1 family
          Length = 206

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +1

Query: 361 NGEWTVTEFVNENGNPVDVANPPVATSTTGPL-QIPQQASTPIVRPEQTCQRQKQWSKAA 537
           +G+W +T+FV E+ +P+ V +P  A  T     +  Q+ +  +   ++ C   K+   A 
Sbjct: 108 SGKWVITKFVKEHNHPL-VVSPREARHTLDEKDKRIQELTIELRNKKRLCAAYKEQLDAF 166

Query: 538 IKSVRE 555
            K V E
Sbjct: 167 AKIVEE 172


>At4g21120.1 68417.m03054 amino acid permease family protein similar
           to cationic amino acid transporter-1 [Rattus norvegicus]
           GI:1589917; contains Pfam profile PF00324: Amino acid
           permease
          Length = 594

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 405 IPIFIDEFCYSPFAVILPISEAILDYIRPEI 313
           +   +  FCY+ FAV +P++     Y+R E+
Sbjct: 117 VSAMLSVFCYTEFAVEIPVAGGSFAYLRVEL 147


>At2g34960.1 68415.m04290 amino acid permease family protein similar
           to cationic amino acid transporter 3 [Rattus norvegicus]
           GI:2116552; contains Pfam profile PF00324: Amino acid
           permease
          Length = 569

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 384 FCYSPFAVILPISEAILDYIRPEINLISQF 295
           FCY+ FAV +P++     Y+R E+   + F
Sbjct: 118 FCYTEFAVEIPVAGGSFAYLRIELGDFAAF 147


>At5g07870.1 68418.m00906 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase,
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           transferase family domain PF002458
          Length = 464

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 298 LGDKIYFWTYVIKDGLGYRQDNGEWTVTEFVNENGNPV-DVANPPVATSTTGPL 456
           LGD   FW +   + L    ++ E T+    N N N +  + NPP+    TGP+
Sbjct: 178 LGDGSSFWQFF--NSLSEIFNSQEETIGNNNNNNNNALLCLKNPPIIREATGPM 229


>At2g03140.1 68415.m00267 CAAX amino terminal protease family
           protein very low similarity to SP|Q40863 Late
           embryogenesis abundant protein EMB8 from Picea glauca;
           contains Pfam profile PF02517 CAAX amino terminal
           protease family protein
          Length = 1805

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 592 RLFFSNSSLKIKVPLQILS--RPWTTVSDVG 506
           RLF +  S  I   L+ LS  RPWTT++ VG
Sbjct: 249 RLFTAGDSDDISTALRFLSKTRPWTTLTAVG 279


>At1g55340.1 68414.m06322 expressed protein
          Length = 205

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 627 FPEEPDYPFNVYTTDGTIGFD-SGSLIISPVLLESKFSEDKIY 752
           F   P+     YTT G++G D SG +I  PV    K    K+Y
Sbjct: 85  FMASPEKEDRYYTTRGSMGIDESGKIIKEPVKETKKHVWPKLY 127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,245,063
Number of Sequences: 28952
Number of extensions: 400814
Number of successful extensions: 1310
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)