Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20096
(679 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30580.1 68414.m03741 expressed protein 131 4e-31
At1g56050.1 68414.m06436 GTP-binding protein-related similar to ... 93 2e-19
At5g18570.1 68418.m02195 GTP1/OBG family protein similar to SP|P... 46 2e-05
At5g57960.1 68418.m07252 GTP-binding family protein similar to S... 42 5e-04
At1g07620.1 68414.m00817 GTP1/OBG family protein similar to SP|P... 40 0.001
At4g39520.1 68417.m05588 GTP-binding protein, putative similar t... 36 0.033
At3g49730.1 68416.m05437 pentatricopeptide (PPR) repeat-containi... 35 0.057
At1g10300.1 68414.m01160 GTP-binding protein-related contains si... 35 0.057
At1g72660.1 68414.m08403 developmentally regulated GTP-binding p... 34 0.075
At1g17470.1 68414.m02143 developmentally regulated GTP-binding p... 34 0.075
At1g78010.1 68414.m09091 tRNA modification GTPase, putative simi... 33 0.17
At4g02790.1 68417.m00379 GTP-binding family protein contains Pfa... 33 0.23
At1g80770.1 68414.m09476 expressed protein 33 0.23
At1g50920.1 68414.m05725 GTP-binding protein-related similar to ... 32 0.30
At3g14900.1 68416.m01884 expressed protein 32 0.40
At3g07050.1 68416.m00837 GTP-binding family protein contains Pfa... 32 0.40
At2g41670.1 68415.m05148 GTP-binding family protein contains Pfa... 31 0.53
At1g30960.1 68414.m03791 GTP-binding protein (ERG) identical to ... 31 0.53
At5g39960.1 68418.m04846 GTP-binding family protein contains Pfa... 31 0.70
At4g39320.1 68417.m05567 microtubule-associated protein-related ... 30 1.2
At3g12080.1 68416.m01504 GTP-binding family protein contains Pfa... 30 1.6
At1g52980.1 68414.m05995 GTP-binding family protein contains Pfa... 30 1.6
At4g37440.1 68417.m05299 expressed protein 29 2.8
At1g18410.1 68414.m02299 kinesin motor protein-related similar t... 29 2.8
At3g47450.2 68416.m05160 expressed protein 29 3.7
At3g47450.1 68416.m05159 expressed protein 29 3.7
At3g57180.1 68416.m06366 expressed protein 28 4.9
At2g27200.1 68415.m03269 GTP-binding family protein contains Pfa... 28 4.9
At1g08410.1 68414.m00930 GTP-binding family protein contains Pfa... 28 4.9
At5g66470.1 68418.m08382 expressed protein 28 6.5
At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR... 27 8.6
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 27 8.6
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 27 8.6
At3g14460.1 68416.m01832 disease resistance protein (NBS-LRR cla... 27 8.6
At1g58210.1 68414.m06610 kinase interacting family protein simil... 27 8.6
>At1g30580.1 68414.m03741 expressed protein
Length = 394
Score = 131 bits (317), Expect = 4e-31
Identities = 71/143 (49%), Positives = 98/143 (68%), Gaps = 1/143 (0%)
Frame = +1
Query: 253 RSKVPAFLNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAIFNLCRAFDDEDVIHVDGDVN 432
+S++PAFL + DIAGLVRGA EGQGLGN FLSHI+A D IF++ RAF+D D+IHVD V+
Sbjct: 83 KSEIPAFLEIHDIAGLVRGAHEGQGLGNNFLSHIRAVDGIFHVLRAFEDADIIHVDDIVD 142
Query: 433 PVRDLETIAEELRLKDEEQLLQHIENWTEWSTEAAKRNLNLNTIPWLKSRLFLVDEKKHI 612
PVRDLETI EELRLKD E + + I++ + + + L + K + +L ++ K +
Sbjct: 143 PVRDLETITEELRLKDIEFVGKKIDDVEKSMKRSNDKQLKIELELLQKVKAWL-EDGKDV 201
Query: 613 RFGDW-SALILKFK*IPVLTSKP 678
RFGDW +A I +L++KP
Sbjct: 202 RFGDWKTADIEILNTFQLLSAKP 224
Score = 106 bits (255), Expect = 1e-23
Identities = 43/69 (62%), Positives = 59/69 (85%)
Frame = +2
Query: 56 LIGRVGTNLKVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPNESRVPVPDERYDYL 235
++GR ++LK+GIVG+PNVGKST FN LTK AENFPFCTI+PNE+RV +PDER+D+L
Sbjct: 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLSIPAENFPFCTIEPNEARVNIPDERFDWL 76
Query: 236 CEYHKPEAK 262
C+ +KP+++
Sbjct: 77 CQTYKPKSE 85
>At1g56050.1 68414.m06436 GTP-binding protein-related similar to
GTP-binding protein GI:10176676 from [Bacillus
halodurans]
Length = 421
Score = 93.1 bits (221), Expect = 2e-19
Identities = 43/90 (47%), Positives = 64/90 (71%)
Frame = +1
Query: 238 RIS*TRSKVPAFLNVVDIAGLVRGAAEGQGLGNAFLSHIKACDAIFNLCRAFDDEDVIHV 417
++S ++ VPA + VDIAGLV+GA++G+GLGN FLSHI+ D+I + R F+D D+IHV
Sbjct: 108 KLSGSQKTVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIIHV 167
Query: 418 DGDVNPVRDLETIAEELRLKDEEQLLQHIE 507
+G V+P D++ I EL D +Q+ + IE
Sbjct: 168 NGKVDPKSDIDVINLELIFCDLDQIGKRIE 197
Score = 70.5 bits (165), Expect = 9e-13
Identities = 34/58 (58%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Frame = +2
Query: 65 RVGTNLKVGIVGVPNVGKSTFFN-VLTKSQAAAENFPFCTIDPNESRVPVPDERYDYL 235
+V +LK GIVG+PNVGKST FN V+ +A A NFPFCTI+PN V VPD R L
Sbjct: 49 KVSMSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLQVL 106
>At5g18570.1 68418.m02195 GTP1/OBG family protein similar to
SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
subtilis}; contains Pfam profile PF01018: GTP1/OBG
family
Length = 681
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/36 (52%), Positives = 25/36 (69%)
Frame = +2
Query: 86 VGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPN 193
VGIVG PN GKST +V++ +Q N+PF T+ PN
Sbjct: 381 VGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPN 416
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 280 VVDIAGLVRGAAEGQGLGNAFLSHIKACDAIFNL 381
V D+ GL+ GA G GLG+ FL H + C A+ ++
Sbjct: 430 VADLPGLLEGAHRGFGLGHEFLRHTERCSALVHV 463
>At5g57960.1 68418.m07252 GTP-binding family protein similar to
SP|P25519 GTP-binding protein hflX {Escherichia coli}
Length = 540
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/40 (50%), Positives = 23/40 (57%)
Frame = +2
Query: 86 VGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPNESRV 205
V +VG N GKST N LT + AEN F T+DP RV
Sbjct: 312 VSLVGYTNAGKSTLLNQLTGANVLAENRLFATLDPTTRRV 351
>At1g07620.1 68414.m00817 GTP1/OBG family protein similar to
SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
subtilis}; contains Pfam profile PF01018: GTP1/OBG
family
Length = 1016
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +2
Query: 86 VGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPNESRVPVPD 217
VG+VG+PN GKST L++++ ++ F T+ PN V D
Sbjct: 829 VGLVGMPNAGKSTLLGALSRAKPRVGHYAFTTLRPNLGNVNYDD 872
Score = 35.5 bits (78), Expect = 0.033
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 274 LNVVDIAGLVRGAAEGQGLGNAFLSHIK 357
+ V DI GL++GA + +GLG+ FL HI+
Sbjct: 875 MTVADIPGLIKGAHQNRGLGHNFLRHIE 902
>At4g39520.1 68417.m05588 GTP-binding protein, putative similar to
SP|Q9Y295 Developmentally regulated GTP-binding protein
1 (DRG 1) {Homo sapiens}; contains Pfam profiles
PF02824: TGS domain, PF01018: GTP1/OBG family
Length = 369
Score = 35.5 bits (78), Expect = 0.033
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +2
Query: 83 KVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTI 184
+VG+VG P+VGKST N LT + + ++ F T+
Sbjct: 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTL 100
>At3g49730.1 68416.m05437 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1184
Score = 34.7 bits (76), Expect = 0.057
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 86 VGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTIDPNESRVPVPDERYDYLCE 241
+ +VG N GKST + LTK+ F T+DP +P + L +
Sbjct: 912 IAVVGYTNAGKSTLISALTKTALYCNERLFATLDPTLKSAHLPSGNFVLLSD 963
>At1g10300.1 68414.m01160 GTP-binding protein-related contains
similarity to nucleolar GTP-binding protein 1 SP: Q9BZE4
from [Homo sapiens];
Length = 687
Score = 34.7 bits (76), Expect = 0.057
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 92 IVGVPNVGKSTFFNVLTKSQAAAENFPFCT 181
I G PNVGKS+F N +T++ A + + F T
Sbjct: 202 ICGCPNVGKSSFMNKVTRADVAVQPYAFTT 231
>At1g72660.1 68414.m08403 developmentally regulated GTP-binding
protein, putative very strong similarity to
developmentally regulated GTP binding protein (DRG1)
[Arabidopsis thaliana] GI:2345150
Length = 399
Score = 34.3 bits (75), Expect = 0.075
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +2
Query: 83 KVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTI 184
+V ++G P+VGKST +LT + + A ++ F T+
Sbjct: 64 RVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTL 97
>At1g17470.1 68414.m02143 developmentally regulated GTP-binding
protein (DRG1) identical to developmentally regulated
GTP binding protein (DRG1) [Arabidopsis thaliana]
GI:2345150
Length = 399
Score = 34.3 bits (75), Expect = 0.075
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +2
Query: 83 KVGIVGVPNVGKSTFFNVLTKSQAAAENFPFCTI 184
+V ++G P+VGKST +LT + + A ++ F T+
Sbjct: 64 RVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTL 97
>At1g78010.1 68414.m09091 tRNA modification GTPase, putative similar
to tRNA modification GTPase trmE [strain PCC 7120,
Anabaena sp.] SWISS-PROT:Q8YN91
Length = 560
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 74 TNLKVGIVGVPNVGKSTFFNVLTKSQAA 157
+ L++ IVG PNVGKS+ N +KS+ A
Sbjct: 316 SGLQIAIVGRPNVGKSSLLNAWSKSERA 343
>At4g02790.1 68417.m00379 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 372
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 62 GRVGTNLKVGIVGVPNVGKSTFFNVLTKSQAAA 160
G + +++ GI+G PNVGKS+ N L K + A
Sbjct: 208 GLLPRSVRAGIIGYPNVGKSSLINRLLKRKICA 240
>At1g80770.1 68414.m09476 expressed protein
Length = 451
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 92 IVGVPNVGKSTFFNVLTKSQAAAENFPFCT 181
+VG PNVGKS+ +L+ + N+PF T
Sbjct: 258 LVGAPNVGKSSLVRILSTGKPEICNYPFTT 287
>At1g50920.1 68414.m05725 GTP-binding protein-related similar to
GTP-binding protein SP:Q99ME9 from [Mus musculus]
Length = 671
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 92 IVGVPNVGKSTFFNVLTKSQAAAENFPFCT 181
I G PNVGKS+F N +T++ + + F T
Sbjct: 173 ICGYPNVGKSSFMNKVTRADVDVQPYAFTT 202
>At3g14900.1 68416.m01884 expressed protein
Length = 611
Score = 31.9 bits (69), Expect = 0.40
Identities = 22/70 (31%), Positives = 31/70 (44%)
Frame = +1
Query: 394 DDEDVIHVDGDVNPVRDLETIAEELRLKDEEQLLQHIENWTEWSTEAAKRNLNLNTIPWL 573
DD +V VD D N V D+E EE L+DE + E+ W + K N + L
Sbjct: 451 DDGEVEEVDDDDNMVVDVEGNVEEDSLEDEIEESDPEEDERYWEEQFNKATNNAERMEKL 510
Query: 574 KSRLFLVDEK 603
+V +K
Sbjct: 511 AEMSMVVSDK 520
>At3g07050.1 68416.m00837 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 582
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +2
Query: 77 NLKVGIVGVPNVGKSTFFNVLTKS 148
++ VGI+G+PNVGKS+ N L ++
Sbjct: 253 SITVGIIGLPNVGKSSLINSLKRA 276
>At2g41670.1 68415.m05148 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 386
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/31 (54%), Positives = 19/31 (61%)
Frame = +2
Query: 80 LKVGIVGVPNVGKSTFFNVLTKSQAAAENFP 172
L V +VGVPNVGKS N + Q AA FP
Sbjct: 137 LLVMVVGVPNVGKSALINSI--HQIAAARFP 165
>At1g30960.1 68414.m03791 GTP-binding protein (ERG) identical to
GTP-binding protein ERG SP:O82653 from [Arabidopsis
thaliana]
Length = 437
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 77 NLKVGIVGVPNVGKSTFFNVLTKSQAAA 160
+L VGI+G PN GKS+ N + ++ AA
Sbjct: 153 SLNVGIIGPPNAGKSSLTNFMVGTKVAA 180
>At5g39960.1 68418.m04846 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 616
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 80 LKVGIVGVPNVGKSTFFNVLTKSQ 151
L++ IVG PNVGKST N L + +
Sbjct: 313 LQLAIVGKPNVGKSTLLNALLEEE 336
>At4g39320.1 68417.m05567 microtubule-associated protein-related
contains weak similarity to microtubule-associated
protein 1B (MAP 1B) (Swiss-Prot:P46821) [Homo sapiens]
Length = 166
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 176 CTIDP---NESRVPVPDERYDYLCEYHKPEAKCQLSS 277
C + P +E+ P P+E D L EYHK +A LS+
Sbjct: 4 CALKPKVLSETGAPAPEELKDSLLEYHKMDAAKSLSN 40
>At3g12080.1 68416.m01504 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 663
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 83 KVGIVGVPNVGKSTFFNVLT-KSQAAAENFPFCTID 187
+V IVG PNVGKS FN L +++A + P T D
Sbjct: 160 RVAIVGRPNVGKSALFNRLVGENRAIVVDEPGVTRD 195
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 86 VGIVGVPNVGKSTFFNVLTK 145
+ I+G PNVGKS+ N L +
Sbjct: 371 IAIIGRPNVGKSSILNALVR 390
>At1g52980.1 68414.m05995 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 576
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 80 LKVGIVGVPNVGKSTFFNVL-TKSQAAAENFP 172
+ VG VG PNVGKS+ N L TK+ P
Sbjct: 310 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIP 341
>At4g37440.1 68417.m05299 expressed protein
Length = 471
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 411 DDVFIIECTTQVKNSITSFDVGQKGVSQSLAFSSAAHE 298
D+V I+EC ++ ++ D G G S S + + HE
Sbjct: 71 DEVDILECNDNIEIQVSGCDDGTDGYSSSFGGTDSEHE 108
>At1g18410.1 68414.m02299 kinesin motor protein-related similar to
kinesin-related protein GB:AAF24855 GI:6692749 from
[Arabidopsis thaliana]
Length = 1140
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +1
Query: 436 VRDLETIAEELRLKDEEQLLQHIENWT-EWSTEAAKRNLNLNTIPWLKSRLFLVDEKKHI 612
+++ T+ L K+ E E T S +A R L N + W KS+ ++EK +
Sbjct: 489 IKETMTVNTSLEAKNRELEQSKKETMTVNTSLKAKNRELEQNLVHW-KSKAKEMEEKSEL 547
Query: 613 RFGDWSALILKFK 651
+ WS L ++
Sbjct: 548 KNRSWSQKELSYR 560
>At3g47450.2 68416.m05160 expressed protein
Length = 561
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 86 VGIVGVPNVGKSTFFNVLTKSQA 154
V I+G NVGKS F N L K+ A
Sbjct: 282 VYILGAANVGKSAFINALLKTMA 304
>At3g47450.1 68416.m05159 expressed protein
Length = 561
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 86 VGIVGVPNVGKSTFFNVLTKSQA 154
V I+G NVGKS F N L K+ A
Sbjct: 282 VYILGAANVGKSAFINALLKTMA 304
>At3g57180.1 68416.m06366 expressed protein
Length = 644
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 71 GTNLKVGIVGVPNVGKSTFFNVLTKSQAA 157
G V ++G N GKST N L+K A
Sbjct: 374 GPRGNVWVIGAQNAGKSTLINALSKKDGA 402
>At2g27200.1 68415.m03269 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 537
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 86 VGIVGVPNVGKSTFFNVL 139
VG VG PNVGKS+ N L
Sbjct: 307 VGFVGYPNVGKSSTINAL 324
>At1g08410.1 68414.m00930 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 589
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 86 VGIVGVPNVGKSTFFNVL 139
VG VG PNVGKS+ N L
Sbjct: 311 VGFVGYPNVGKSSTINAL 328
>At5g66470.1 68418.m08382 expressed protein
Length = 427
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 86 VGIVGVPNVGKSTFFN 133
V +VG+PNVGKST N
Sbjct: 132 VAVVGMPNVGKSTLSN 147
>At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR
class), putative (RPS4) domain signature TIR-NBS-LRR
exists, suggestive of a disease resistance protein.
Identical to RPS4 (GI:11357255). False intron created at
intron 2 to escape a frameshift in the BAC sequence.
Length = 1217
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 71 GTNLKVGIVGVPNVGKSTFFNVLTKS 148
GT + +G+VG+P +GK+T L K+
Sbjct: 228 GTRI-IGVVGMPGIGKTTLLKELYKT 252
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
(CHRromatin Organization MOdifier)
Length = 2228
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +1
Query: 340 FLSHIKACDAIFNLCRAFDDEDVIHVDGDVNPVRDLETIAEELRLKDEEQLL 495
FL +AC NL A + VI D D NP D++ + R+ ++LL
Sbjct: 1063 FLLSTRACGLGINLATA---DTVIIYDSDFNPHADIQAMNRAHRIGQSKRLL 1111
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 316 EGQGLGNAFLSHIKACDAIFNLCRAFDDEDVIHVDGDVNPVRDLETIAEELRL 474
E G+G+ S K F +F DEDV + G+ PV+D+ ++ R+
Sbjct: 305 EFMGMGDKSNSASKQIYLTFPADSSFTDEDVSNYFGNFGPVQDVRIPYQQKRM 357
>At3g14460.1 68416.m01832 disease resistance protein (NBS-LRR
class), putative domain signature NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1424
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 68 VGTNLKVGIVGVPNVGKSTFFNVLTKSQAAAENF 169
+G + +VG+P VGK+T ++ E+F
Sbjct: 190 IGKPAVISVVGMPGVGKTTLTEIVFNDYRVTEHF 223
>At1g58210.1 68414.m06610 kinase interacting family protein similar to
kinase interacting protein 1 (GI:13936326) {Petunia
integrifolia}
Length = 1246
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +1
Query: 418 DGDVNPVRDLETIAEELRLKDEEQLLQHIENWTEWSTEAAKRNLNLNTIPWLKSRL 585
D D +P + T+ +++R + L +++E W +ST + T+ LKS L
Sbjct: 983 DVDDSPRTKIPTVEDKVRADIDAVLEENLEFWLRFSTSVHQIQKYQTTVQDLKSEL 1038
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,844,537
Number of Sequences: 28952
Number of extensions: 252106
Number of successful extensions: 970
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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