Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20084
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61250.2 68418.m07684 glycosyl hydrolase family 79 N-terminal...    71   5e-13
At5g61250.1 68418.m07683 glycosyl hydrolase family 79 N-terminal...    71   5e-13
At5g07830.1 68418.m00898 glycosyl hydrolase family 79 N-terminal...    61   7e-10
At5g34940.2 68418.m04121 glycosyl hydrolase family 79 N-terminal...    57   1e-08
At5g34940.1 68418.m04120 glycosyl hydrolase family 79 N-terminal...    57   1e-08
At5g34940.3 68418.m04122 glycosyl hydrolase family 79 N-terminal...    40   0.002
At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase fa...    29   3.6  
At5g13130.1 68418.m01504 hypothetical protein low similarity to ...    28   4.8  
At4g20240.1 68417.m02957 cytochrome P450, putative similar to |C...    28   6.4  

>At5g61250.2 68418.m07684 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           GI:8918740 from [Scutellaria baicalensis]
          Length = 539

 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 28/75 (37%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
 Frame = +1

Query: 13  WIDKLGLSAKYNISTVIRQSFIGGYYSLVD-ENLKPLPDWWISVLYKKLVGNKVLQVQCN 189
           ++D+LG+S+K+N     RQ+ +GG+Y L++ E   P PD++ ++L+ +L+G  +L VQ  
Sbjct: 338 YLDQLGISSKHNTKVYCRQALVGGFYGLLEKETFVPNPDYYSALLWHRLMGKGILGVQTT 397

Query: 190 CSRFQRLYIHCTNRK 234
            S + R Y+HC+ R+
Sbjct: 398 ASEYLRAYVHCSKRR 412



 Score = 31.1 bits (67), Expect = 0.68
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +3

Query: 276 LEMAKARFFLNGTALHGDDLIIHEYIISAPSNNRKSKTILLNGWPLY--YESNLHNLRPN 449
           LE  K++    G       L   EY +S    + +SK +LLNG PL      ++  L P 
Sbjct: 451 LETIKSKVSWVGNKASDGYLNREEYHLSPKDGDLRSKIMLLNGKPLVPTATGDIPKLEPV 510

Query: 450 IHRYGRYVSLPPYSIGFWVI 509
            H     V + P SI F V+
Sbjct: 511 RHGVKSPVYINPLSISFIVL 530


>At5g61250.1 68418.m07683 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           GI:8918740 from [Scutellaria baicalensis]
          Length = 539

 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 28/75 (37%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
 Frame = +1

Query: 13  WIDKLGLSAKYNISTVIRQSFIGGYYSLVD-ENLKPLPDWWISVLYKKLVGNKVLQVQCN 189
           ++D+LG+S+K+N     RQ+ +GG+Y L++ E   P PD++ ++L+ +L+G  +L VQ  
Sbjct: 338 YLDQLGISSKHNTKVYCRQALVGGFYGLLEKETFVPNPDYYSALLWHRLMGKGILGVQTT 397

Query: 190 CSRFQRLYIHCTNRK 234
            S + R Y+HC+ R+
Sbjct: 398 ASEYLRAYVHCSKRR 412



 Score = 31.1 bits (67), Expect = 0.68
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +3

Query: 276 LEMAKARFFLNGTALHGDDLIIHEYIISAPSNNRKSKTILLNGWPLY--YESNLHNLRPN 449
           LE  K++    G       L   EY +S    + +SK +LLNG PL      ++  L P 
Sbjct: 451 LETIKSKVSWVGNKASDGYLNREEYHLSPKDGDLRSKIMLLNGKPLVPTATGDIPKLEPV 510

Query: 450 IHRYGRYVSLPPYSIGFWVI 509
            H     V + P SI F V+
Sbjct: 511 RHGVKSPVYINPLSISFIVL 530


>At5g07830.1 68418.m00898 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           GI:8918740 from [Scutellaria baicalensis]
          Length = 543

 Score = 60.9 bits (141), Expect = 7e-10
 Identities = 26/72 (36%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
 Frame = +1

Query: 13  WIDKLGLSAKYNISTVIRQSFIGGYYSLVDE-NLKPLPDWWISVLYKKLVGNKVLQVQCN 189
           ++D+LG+SA++N     RQ+ +GG+Y L+++    P PD++ ++L+ +L+G  VL VQ +
Sbjct: 342 YLDQLGMSARHNTKVYCRQTLVGGFYGLLEKGTFVPNPDYYSALLWHRLMGKGVLAVQTD 401

Query: 190 CSRFQRLYIHCT 225
                R+Y HC+
Sbjct: 402 GPPQLRVYAHCS 413


>At5g34940.2 68418.m04121 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           precursor [Scutellaria baicalensis] GI:8918740; contains
           Pfam profile PF03662: Glycosyl hydrolase family 79,
           N-terminal domain
          Length = 536

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 25/74 (33%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
 Frame = +1

Query: 13  WIDKLGLSAKYNISTVIRQSFIGGYYSLVDE-NLKPLPDWWISVLYKKLVGNKVLQVQCN 189
           ++D+LG+++ Y+  T  RQS IGG Y L++  N  P PD++ ++++++L+G K L    +
Sbjct: 341 YLDQLGMASLYDTKTYCRQSLIGGNYGLLNTTNFTPNPDYYSALIWRQLMGRKALFTTFS 400

Query: 190 CSRFQRLYIHCTNR 231
            ++  R Y HC  +
Sbjct: 401 GTKKIRSYTHCARQ 414



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +3

Query: 345 EYIISAPSNNRKSKTILLNGWPLYYES--NLHNLRPNIHRYGRYVSLPPYSIGF 500
           EY ++A   N  S+T+LLNG  L   S  +L  + P        +++ PYSI F
Sbjct: 471 EYHLTAKDGNLHSQTMLLNGNALQVNSMGDLPPIEPIHINSTEPITIAPYSIVF 524


>At5g34940.1 68418.m04120 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           precursor [Scutellaria baicalensis] GI:8918740; contains
           Pfam profile PF03662: Glycosyl hydrolase family 79,
           N-terminal domain
          Length = 401

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 25/74 (33%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
 Frame = +1

Query: 13  WIDKLGLSAKYNISTVIRQSFIGGYYSLVDE-NLKPLPDWWISVLYKKLVGNKVLQVQCN 189
           ++D+LG+++ Y+  T  RQS IGG Y L++  N  P PD++ ++++++L+G K L    +
Sbjct: 206 YLDQLGMASLYDTKTYCRQSLIGGNYGLLNTTNFTPNPDYYSALIWRQLMGRKALFTTFS 265

Query: 190 CSRFQRLYIHCTNR 231
            ++  R Y HC  +
Sbjct: 266 GTKKIRSYTHCARQ 279



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +3

Query: 345 EYIISAPSNNRKSKTILLNGWPLYYES--NLHNLRPNIHRYGRYVSLPPYSIGF 500
           EY ++A   N  S+T+LLNG  L   S  +L  + P        +++ PYSI F
Sbjct: 336 EYHLTAKDGNLHSQTMLLNGNALQVNSMGDLPPIEPIHINSTEPITIAPYSIVF 389


>At5g34940.3 68418.m04122 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           precursor [Scutellaria baicalensis] GI:8918740; contains
           Pfam profile PF03662: Glycosyl hydrolase family 79,
           N-terminal domain
          Length = 382

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = +1

Query: 13  WIDKLGLSAKYNISTVIRQSFIGGYYSLVD-ENLKPLPDWW 132
           ++D+LG+++ Y+  T  RQS IGG Y L++  N  P PD++
Sbjct: 341 YLDQLGMASLYDTKTYCRQSLIGGNYGLLNTTNFTPNPDYY 381


>At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase family
            protein similar to Potential phospholipid-transporting
            ATPase (EC 3.6.3.1) from Homo sapiens [SP|Q9Y2Q0,
            SP|O43520]; contains InterPro accession IPR005834:
            Haloacid dehalogenase-like hydrolase
          Length = 1228

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 49   ISTVIRQSFIGGYYSLVDENLKPLPDWWISVL 144
            I +++  S+ G  Y ++DE L P P +W++ L
Sbjct: 1102 IYSMMPPSYSGNIYRILDEILAPAPIYWMATL 1133


>At5g13130.1 68418.m01504 hypothetical protein low similarity to
           microrchidia [Mus musculus] GI:5410255
          Length = 706

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 158 LEIKFYRCNAIAQGFKDCIFIAPTENTLMTHQRN 259
           LE  F +     QGF+  + +A  E+ L+THQ+N
Sbjct: 458 LEANFIQPAHNKQGFERTVVLAKLESRLVTHQKN 491


>At4g20240.1 68417.m02957 cytochrome P450, putative similar to
           |C71R_ARATH Cytochrome P450 71A27 (SP:O65438)
           [Arabidopsis thaliana]
          Length = 865

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 405 WPLYYESNLHNLRPNIHRYGRYVSL 479
           W L    NLH L PN HRY   +SL
Sbjct: 38  WRLPVIGNLHQLGPNPHRYLHSLSL 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,916,318
Number of Sequences: 28952
Number of extensions: 309331
Number of successful extensions: 638
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)