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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20071
         (462 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25230.1 68416.m03152 peptidyl-prolyl cis-trans isomerase / F...    27   4.7  

>At3g25230.1 68416.m03152 peptidyl-prolyl cis-trans isomerase /
           FK506-binding protein (ROF1) identical to rotamase FKBP
           (ROF1) GB:U49453 [Arabidopsis thaliana] (Mol. Gen.
           Genet. 252 (5), 510-517 (1996))
          Length = 551

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 20  IFLKECQAKNYEVMEYKTDKSRLLD 94
           +FLK+   +N E  E+KTD+ +++D
Sbjct: 306 VFLKKGHGENEEPFEFKTDEEQVVD 330


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,305,754
Number of Sequences: 28952
Number of extensions: 148348
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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