Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20064
(713 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g21150.1 68417.m03057 ribophorin II (RPN2) family protein con... 31 1.0
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 29 3.1
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 29 3.1
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 29 3.1
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 29 3.1
At4g35420.1 68417.m05031 dihydroflavonol 4-reductase family / di... 29 4.0
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 28 5.3
At4g33530.1 68417.m04765 potassium transporter family protein si... 28 7.1
At3g30560.1 68416.m03867 hypothetical protein 28 7.1
At5g14280.1 68418.m01670 DNA-binding storekeeper protein-related... 27 9.3
>At4g21150.1 68417.m03057 ribophorin II (RPN2) family protein
contains Pfam domain PF05817: Ribophorin II (RPN2)
Length = 691
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/34 (41%), Positives = 26/34 (76%), Gaps = 2/34 (5%)
Frame = +3
Query: 300 VGSMTIMYLLIWL-LDL-NTLASIAIVGLILNFV 395
+G++ ++Y+L WL LDL TL +++++G+ L FV
Sbjct: 640 IGAVLLLYVLFWLKLDLFTTLKALSLLGVFLLFV 673
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 WD-40
repeats domain (PF00400) (6 weak)
Length = 1120
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +1
Query: 142 DNFIAKMGEKSSTVQDQEQQVRKVKRTLEGWRVALLSLSL*YCGNNNGILVPLWAQ*QLC 321
DN I +G ST+Q +V +VK L+G + L+ N +LV A QLC
Sbjct: 877 DNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAF---SNVLNVLVSSGADAQLC 933
Query: 322 IFS 330
+++
Sbjct: 934 VWN 936
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 WD-40
repeats domain (PF00400) (6 weak)
Length = 1120
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +1
Query: 142 DNFIAKMGEKSSTVQDQEQQVRKVKRTLEGWRVALLSLSL*YCGNNNGILVPLWAQ*QLC 321
DN I +G ST+Q +V +VK L+G + L+ N +LV A QLC
Sbjct: 877 DNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAF---SNVLNVLVSSGADAQLC 933
Query: 322 IFS 330
+++
Sbjct: 934 VWN 936
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +1
Query: 142 DNFIAKMGEKSSTVQDQEQQVRKVKRTLEGWRVALLSLSL*YCGNNNGILVPLWAQ*QLC 321
DN I +G ST+Q +V +VK L+G + L+ N +LV A QLC
Sbjct: 888 DNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAF---SNVLNVLVSSGADAQLC 944
Query: 322 IFS 330
+++
Sbjct: 945 VWN 947
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +1
Query: 142 DNFIAKMGEKSSTVQDQEQQVRKVKRTLEGWRVALLSLSL*YCGNNNGILVPLWAQ*QLC 321
DN I +G ST+Q +V +VK L+G + L+ N +LV A QLC
Sbjct: 888 DNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAF---SNVLNVLVSSGADAQLC 944
Query: 322 IFS 330
+++
Sbjct: 945 VWN 947
>At4g35420.1 68417.m05031 dihydroflavonol 4-reductase family /
dihydrokaempferol 4-reductase family similar to
dihydroflavonol 4-reductase (Rosa hybrid cultivar,
GI:1332411), CPRD14 protein (Vigna unguiculata,
GI:1854445)
Length = 326
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 328 RRYIIVIEPTMAQGCHCCSHNITDLERV 245
R +I+V E AQG + CS N+ LE +
Sbjct: 235 RTHIVVFEHEAAQGRYICSSNVISLEEL 262
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 339 LDLNTLASIAIVGLILNFVDFMVPVICNQL 428
++L+TLA I ++LNF F CN L
Sbjct: 3959 VELSTLAGSVIEAILLNFAGFYSTAFCNTL 3988
>At4g33530.1 68417.m04765 potassium transporter family protein
similar to K+ transporter HAK5 [Arabidopsis thaliana]
GI:7108597; KUP/HAK/KT Transporter family member,
PMID:11500563; contains Pfam profile PF02705: K+
potassium transporter
Length = 855
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 309 MTIMYLLIWLLDLNTLASIAIVGLILNFVDFMVPVICNQLYGSSSW 446
+T++ LLIW ++ ++ AIV LI+ V F +C+ + SW
Sbjct: 517 VTLIMLLIWQTNIIVVSMFAIVSLIVELVFF--SSVCSSV-ADGSW 559
>At3g30560.1 68416.m03867 hypothetical protein
Length = 1473
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = -1
Query: 326 KIHNCH*AHNGTRMPLLFPQ---YYRLRESKATRQPSK 222
+IH CH ++ + PLLFP+ YRL K SK
Sbjct: 338 RIHECHVSYLSLQYPLLFPKGEDGYRLGIKKTETNTSK 375
>At5g14280.1 68418.m01670 DNA-binding storekeeper protein-related
contains similarity to storekeeper protein [Solanum
tuberosum] gi|14268476|emb|CAC39398; contains PF04504:
Protein of unknown function, DUF573
Length = 572
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 559 YVLHYLHQYIVYCSLDILFY*QHFPVVFIVNSSTALAWHTAHGI 690
Y L L YIV+ D+LF H +F+ + L +H A I
Sbjct: 408 YFLTDLFHYIVFNPNDVLFIGHHVATLFVFLTCRFLVFHGACAI 451
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,170,843
Number of Sequences: 28952
Number of extensions: 302510
Number of successful extensions: 759
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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