Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20040
(701 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40300.1 68415.m04964 ferritin, putative similar to ferritin ... 52 3e-07
At3g56090.1 68416.m06234 ferritin, putative similar to ferritin ... 49 3e-06
At3g11050.1 68416.m01333 ferritin, putative similar to ferritin ... 47 1e-05
At5g01600.1 68418.m00075 ferritin 1 (FER1) identical to ferritin... 47 1e-05
At3g61010.1 68416.m06826 glycosyl hydrolase family protein 85 hy... 40 0.002
At2g32240.1 68415.m03940 expressed protein contains Pfam profile... 31 0.98
At2g19410.1 68415.m02264 protein kinase family protein contains ... 29 2.3
At4g25520.1 68417.m03680 transcriptional co-regulator family pro... 28 5.2
At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protei... 28 6.9
At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protei... 28 6.9
At2g17600.1 68415.m02036 DC1 domain-containing protein contains ... 27 9.1
>At2g40300.1 68415.m04964 ferritin, putative similar to ferritin
subunit cowpea2 precursor [Vigna unguiculata]
GI:2970654; contains Pfam profile PF00210: Ferritin-like
domain
Length = 259
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/62 (43%), Positives = 35/62 (56%)
Frame = +3
Query: 282 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 461
C + +QI E S Y AM AYF D + G AK F +++ EEREHA KL++Y
Sbjct: 97 CEAAINEQINVEYNVSYVYHAMYAYFDRDNIALKGLAKFFKESSLEEREHAEKLMEYQNK 156
Query: 462 RG 467
RG
Sbjct: 157 RG 158
Score = 31.9 bits (69), Expect = 0.42
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 545 LEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQ 673
+E AL LE V + + + S ND HL D++ EFL EQ
Sbjct: 185 MELALSLEKLVNEKLLN-LHSVASKNNDVHLADFIESEFLTEQ 226
>At3g56090.1 68416.m06234 ferritin, putative similar to ferritin
subunit cowpea2 precursor [Vigna unguiculata]
GI:2970654; contains Pfam profile PF00210: Ferritin-like
domain
Length = 259
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/62 (41%), Positives = 34/62 (54%)
Frame = +3
Query: 282 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 461
C + +QI E S Y A+ AYF D V G AK F +++ EEREHA L++Y
Sbjct: 95 CEAAVNEQINVEYNVSYVYHALYAYFDRDNVALKGLAKFFKESSVEEREHAELLMEYQNK 154
Query: 462 RG 467
RG
Sbjct: 155 RG 156
>At3g11050.1 68416.m01333 ferritin, putative similar to ferritin
subunit cowpea2 precursor GI:2970654 (Vigna
unguiculata); contains Pfam profile PF00210:
Ferritin-like domain
Length = 253
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/55 (45%), Positives = 30/55 (54%)
Frame = +3
Query: 303 QIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG 467
QI E S Y A+ AYF D V GFAK F D++ EER HA ++Y RG
Sbjct: 96 QINVEYNVSYVYHALYAYFDRDNVGLKGFAKFFNDSSLEERGHAEMFMEYQNKRG 150
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +2
Query: 542 ALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQ 673
A+E AL LE +TN +++ ND LVD++ EFL EQ
Sbjct: 176 AMELALSLEK-LTNEKLLKLQSVGVKNNDVQLVDFVESEFLGEQ 218
>At5g01600.1 68418.m00075 ferritin 1 (FER1) identical to ferritin
[Arabidopsis thaliana] GI:1246401, GI:8163920
Length = 255
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/59 (40%), Positives = 33/59 (55%)
Frame = +3
Query: 291 MMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG 467
++ +QI E S Y +M AYF D V G AK F +++ EER HA K ++Y RG
Sbjct: 97 VINEQINVEYNVSYVYHSMYAYFDRDNVAMKGLAKFFKESSEEERGHAEKFMEYQNQRG 155
>At3g61010.1 68416.m06826 glycosyl hydrolase family protein 85
hypothetical protein F9F8.14 - Arabidopsis thaliana,
EMBL:AC009991
Length = 355
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 306 IQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDY 452
I E S Y A+ AY D V GF K F D++ EER +A K ++Y
Sbjct: 297 IDVEYNVSYVYHALDAYIERDNVGLKGFTKFFNDSSLEERGYAEKFMEY 345
>At2g32240.1 68415.m03940 expressed protein contains Pfam profile:
PF04508 viral A-type inclusion protein repeat
Length = 775
Score = 30.7 bits (66), Expect = 0.98
Identities = 20/65 (30%), Positives = 26/65 (40%)
Frame = +2
Query: 383 RLREAILRCCD*RTRARDQAH*LPAHEGKADRLRNRPHHVQGPANTSWESGASALEHALK 562
RL EAI R T + D L HE + + + H G A+T AL
Sbjct: 368 RLEEAIERFNQKETESSDLVEKLKTHENQIEEYKKLAHEASGVADTRKVELEDALSKLKN 427
Query: 563 LESDV 577
LES +
Sbjct: 428 LESTI 432
>At2g19410.1 68415.m02264 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 801
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +2
Query: 503 QGPANTSWESGASALEHAL-KLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYK 679
+ P TS +S +E + +L++++ +++ + + CE F+ + V LS E+L+E +
Sbjct: 297 RSPPETSRKSKKVEIEEEVERLKNELQSTVFKYKQACEELFSTQNKVKMLSTEYLNESKR 356
Query: 680 GN 685
N
Sbjct: 357 VN 358
>At4g25520.1 68417.m03680 transcriptional co-regulator family
protein contains similarity to GP|18033922|gb|AAL57277
SEUSS transcriptional co-regulator [Arabidopsis
thaliana]
Length = 748
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 379 APASRSYSSMLRLKNASTRPSSLTTCS*GES*QAP*PTSSRT 504
A A +Y SML +NA P+S T G S Q P P S+++
Sbjct: 558 AAALTNYQSMLMRQNAMNNPNSNTGKQEGFSSQNPTPNSNQS 599
>At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protein
similar to Nit protein 2 [Homo sapiens] GI:9367116;
contains Pfam profile PF00795: hydrolase,
carbon-nitrogen family
Length = 294
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 530 SGASALEHALKLESDVTNSIREVIKTCESSFN 625
S S H LKL S T+++R + + SSFN
Sbjct: 37 SPRSITSHTLKLPSSSTSALRSISSSMASSFN 68
>At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protein
similar to Nit protein 2 [Homo sapiens] GI:9367116;
contains Pfam profile PF00795: hydrolase,
carbon-nitrogen family
Length = 369
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 530 SGASALEHALKLESDVTNSIREVIKTCESSFN 625
S S H LKL S T+++R + + SSFN
Sbjct: 37 SPRSITSHTLKLPSSSTSALRSISSSMASSFN 68
>At2g17600.1 68415.m02036 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 580
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -2
Query: 568 LQLEGVLEG*CAALPRRVCGALYVMRSVTEPVSFPLMSR*SMSLVACSRSS 416
+Q + L CA LPR++ AL+ V +P P++ S S C+R S
Sbjct: 321 VQCDFFLHEVCAGLPRKLAHALHKHPLVLDP--SPILDYSSTSCSTCARES 369
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,975,746
Number of Sequences: 28952
Number of extensions: 276081
Number of successful extensions: 669
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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