Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20029
(715 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 135 2e-32
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 134 5e-32
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 134 5e-32
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 133 1e-31
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 116 2e-26
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 55 4e-08
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 55 4e-08
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 55 4e-08
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 53 2e-07
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 51 7e-07
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 51 9e-07
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 51 9e-07
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 50 1e-06
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 50 1e-06
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 50 1e-06
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 50 1e-06
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 50 2e-06
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 48 5e-06
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 47 1e-05
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 46 2e-05
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 46 2e-05
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 45 4e-05
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 45 4e-05
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 45 4e-05
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 45 6e-05
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 44 8e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 43 2e-04
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 43 2e-04
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 43 2e-04
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 42 3e-04
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 42 3e-04
At4g37020.1 68417.m05244 expressed protein 42 5e-04
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 41 0.001
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 40 0.001
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 40 0.002
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 40 0.002
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 39 0.003
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 39 0.003
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 39 0.004
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 37 0.015
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 36 0.035
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 35 0.062
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 35 0.062
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 35 0.062
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 34 0.081
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 33 0.14
At1g60930.1 68414.m06858 DNA helicase, putative strong similarit... 32 0.33
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 32 0.43
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 32 0.43
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 31 0.76
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 31 0.76
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 31 0.76
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 31 1.0
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli... 30 1.3
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 30 1.3
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 30 1.3
At5g01710.1 68418.m00088 expressed protein 30 1.8
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 29 2.3
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 29 2.3
At5g15390.1 68418.m01800 tRNA/rRNA methyltransferase (SpoU) fami... 29 4.0
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 29 4.0
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 28 7.1
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 28 7.1
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 28 7.1
At4g01760.1 68417.m00229 DC1 domain-containing protein similar t... 28 7.1
At5g42120.1 68418.m05128 lectin protein kinase family protein co... 27 9.3
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 135 bits (327), Expect = 2e-32
Identities = 60/82 (73%), Positives = 71/82 (86%)
Frame = +2
Query: 8 RFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMD 187
+FY+ +E EEWKLETLCDLY+TL+I Q+VIF NTRRKVDWLT+ M RD TVSA HGDMD
Sbjct: 254 QFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 313
Query: 188 QREREVIMRQFRTGSSRVLITT 253
Q R++IMR+FR+GSSRVLITT
Sbjct: 314 QNTRDIIMREFRSGSSRVLITT 335
Score = 74.9 bits (176), Expect = 5e-14
Identities = 38/76 (50%), Positives = 47/76 (61%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDF 435
LLARGIDVQQVS VIN+DLP+ ENY NFVT D R L DI+ F
Sbjct: 337 LLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 396
Query: 436 YHTSIVEMPSDVANLI 483
Y+ + E+PS+VA+L+
Sbjct: 397 YNVVVEELPSNVADLL 412
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 134 bits (324), Expect = 5e-32
Identities = 59/82 (71%), Positives = 71/82 (86%)
Frame = +2
Query: 8 RFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMD 187
+FY+ ++ EEWKLETLCDLY+TL+I Q+VIF NTRRKVDWLT+ M RD TVSA HGDMD
Sbjct: 256 QFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 315
Query: 188 QREREVIMRQFRTGSSRVLITT 253
Q R++IMR+FR+GSSRVLITT
Sbjct: 316 QNTRDIIMREFRSGSSRVLITT 337
Score = 73.7 bits (173), Expect = 1e-13
Identities = 36/76 (47%), Positives = 47/76 (61%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDF 435
LLARGIDVQQVS VIN+DLP+ ENY NF+T D R + DI+ F
Sbjct: 339 LLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQRF 398
Query: 436 YHTSIVEMPSDVANLI 483
Y+ + E+PS+VA+L+
Sbjct: 399 YNVVVEELPSNVADLL 414
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 134 bits (324), Expect = 5e-32
Identities = 59/82 (71%), Positives = 71/82 (86%)
Frame = +2
Query: 8 RFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMD 187
+FY+ +E E+WKLETLCDLY+TL+I Q+VIF NTRRKVDWLT+ M RD TVSA HGDMD
Sbjct: 254 QFYVNVEKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 313
Query: 188 QREREVIMRQFRTGSSRVLITT 253
Q R++IMR+FR+GSSRVLITT
Sbjct: 314 QNTRDIIMREFRSGSSRVLITT 335
Score = 74.1 bits (174), Expect = 8e-14
Identities = 38/76 (50%), Positives = 48/76 (63%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDF 435
LLARGIDVQQVS VIN+DLP+ ENY NFVT D+R L DI+ F
Sbjct: 337 LLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQKF 396
Query: 436 YHTSIVEMPSDVANLI 483
Y+ + E+PS+VA+L+
Sbjct: 397 YNVVVEELPSNVADLL 412
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 133 bits (322), Expect = 1e-31
Identities = 57/85 (67%), Positives = 72/85 (84%)
Frame = +2
Query: 8 RFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMD 187
+F++A+E EEWK +TLCDLYDTL+I QAVIFCNT+RKVD+L+E M +FTVS+MHGDM
Sbjct: 250 QFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMP 309
Query: 188 QREREVIMRQFRTGSSRVLITTVYW 262
Q+ER+ IM +FR+G SRVLITT W
Sbjct: 310 QKERDAIMNEFRSGDSRVLITTDVW 334
Score = 74.5 bits (175), Expect = 6e-14
Identities = 39/74 (52%), Positives = 45/74 (60%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDFYH 441
ARGIDVQQVS VINYDLP+NRE Y NFV D + L+DIE +Y
Sbjct: 335 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYS 394
Query: 442 TSIVEMPSDVANLI 483
T I EMP +VA+LI
Sbjct: 395 TQIDEMPMNVADLI 408
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 116 bits (278), Expect = 2e-26
Identities = 50/85 (58%), Positives = 65/85 (76%)
Frame = +2
Query: 8 RFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMD 187
++Y+ ++ EEWK +TLCDLY L+I QA+IFCNTR+KVDWLTE M +F VS+MHGD
Sbjct: 237 QYYVDVDKEEWKFDTLCDLYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKR 296
Query: 188 QREREVIMRQFRTGSSRVLITTVYW 262
Q+ER+ IM QFR+ SRVLI + W
Sbjct: 297 QKERDDIMNQFRSFKSRVLIASDVW 321
Score = 64.1 bits (149), Expect = 9e-11
Identities = 34/70 (48%), Positives = 40/70 (57%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDFYH 441
ARGIDVQ VS VINYD+P+N E Y NFV +D + LKDIE Y
Sbjct: 322 ARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKDIERHYG 381
Query: 442 TSIVEMPSDV 471
T I EMP+D+
Sbjct: 382 TKIREMPADL 391
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 55.2 bits (127), Expect = 4e-08
Identities = 24/57 (42%), Positives = 39/57 (68%)
Frame = +2
Query: 83 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
++ +IFC+T+R D LT ++ R F +A+HGD Q ER+ ++ QFR+G + VL+ T
Sbjct: 404 SKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVAT 459
Score = 33.9 bits (74), Expect = 0.11
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENY 333
ARG+DV+ + V+NYD P+ E+Y
Sbjct: 463 ARGLDVKDIRAVVNYDFPNGVEDY 486
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 55.2 bits (127), Expect = 4e-08
Identities = 24/57 (42%), Positives = 39/57 (68%)
Frame = +2
Query: 83 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
++ +IFC+T+R D LT ++ R F +A+HGD Q ER+ ++ QFR+G + VL+ T
Sbjct: 404 SKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVAT 459
Score = 33.9 bits (74), Expect = 0.11
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENY 333
ARG+DV+ + V+NYD P+ E+Y
Sbjct: 463 ARGLDVKDIRAVVNYDFPNGVEDY 486
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 55.2 bits (127), Expect = 4e-08
Identities = 24/57 (42%), Positives = 39/57 (68%)
Frame = +2
Query: 83 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
++ +IFC+T+R D LT ++ R F +A+HGD Q ER+ ++ QFR+G + VL+ T
Sbjct: 404 SKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVAT 459
Score = 33.9 bits (74), Expect = 0.11
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENY 333
ARG+DV+ + V+NYD P+ E+Y
Sbjct: 463 ARGLDVKDIRAVVNYDFPNGVEDY 486
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/57 (40%), Positives = 38/57 (66%)
Frame = +2
Query: 83 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
++ +IFC+T+R D L ++ R F +A+HGD Q ER+ ++ QFR+G + VL+ T
Sbjct: 475 SKIIIFCSTKRMCDQLARNL-TRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVAT 530
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/73 (23%), Positives = 30/73 (41%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDFYH 441
ARG+DV+ + V+NYD P+ E+Y F + D + D+
Sbjct: 534 ARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILE 593
Query: 442 TSIVEMPSDVANL 480
+ ++P V +
Sbjct: 594 GANQKVPPQVREM 606
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 51.2 bits (117), Expect = 7e-07
Identities = 25/57 (43%), Positives = 36/57 (63%)
Frame = +2
Query: 83 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
++ +IFC+T+R D L S+ R F +HGD Q ER+ ++ QFR+G S VLI T
Sbjct: 681 SKVIIFCSTKRLCDHLARSVG-RHFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIAT 736
Score = 37.1 bits (82), Expect = 0.012
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDFYH 441
ARG+D++ + VINYD P+ E+Y F TE D + D+
Sbjct: 740 ARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLE 799
Query: 442 TSIVEMPSDVANL 480
+ ++P V ++
Sbjct: 800 GANQQVPPQVRDI 812
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 50.8 bits (116), Expect = 9e-07
Identities = 27/83 (32%), Positives = 44/83 (53%)
Frame = +2
Query: 5 TRFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDM 184
T+FY +E E K+ L L+ L I Q++IFCN+ +V+ L + + ++ +H M
Sbjct: 344 TQFYAFVE-ERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKM 402
Query: 185 DQREREVIMRQFRTGSSRVLITT 253
Q R + FR G+ R L+ T
Sbjct: 403 LQDHRNRVFHDFRNGACRNLVCT 425
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/76 (34%), Positives = 33/76 (43%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDF 435
L RGID+Q V+ VIN+D P N E Y N +T DR L IE
Sbjct: 427 LFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQE 486
Query: 436 YHTSIVEMPSDVANLI 483
T I ++P + I
Sbjct: 487 LGTEIKQIPPHIDQAI 502
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 50.8 bits (116), Expect = 9e-07
Identities = 27/83 (32%), Positives = 44/83 (53%)
Frame = +2
Query: 5 TRFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDM 184
T+FY +E E K+ L L+ L I Q++IFCN+ +V+ L + + ++ +H M
Sbjct: 344 TQFYAFVE-ERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKM 402
Query: 185 DQREREVIMRQFRTGSSRVLITT 253
Q R + FR G+ R L+ T
Sbjct: 403 LQDHRNRVFHDFRNGACRNLVCT 425
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/76 (34%), Positives = 33/76 (43%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDF 435
L RGID+Q V+ VIN+D P N E Y N +T DR L IE
Sbjct: 427 LFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQE 486
Query: 436 YHTSIVEMPSDVANLI 483
T I ++P + I
Sbjct: 487 LGTEIKQIPPHIDQAI 502
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/83 (31%), Positives = 45/83 (54%)
Frame = +2
Query: 5 TRFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDM 184
T++Y +E E K+ L L+ L I Q++IFCN+ +V+ L + + ++ +H M
Sbjct: 337 TQYYAFVE-ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKM 395
Query: 185 DQREREVIMRQFRTGSSRVLITT 253
Q R + +FR G+ R L+ T
Sbjct: 396 VQDHRNRVFHEFRNGACRNLVCT 418
Score = 44.4 bits (100), Expect = 8e-05
Identities = 25/76 (32%), Positives = 33/76 (43%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDF 435
L RGID+Q V+ VIN+D P E+Y N VT DR + E
Sbjct: 420 LFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQE 479
Query: 436 YHTSIVEMPSDVANLI 483
T I +PS++ I
Sbjct: 480 LGTEIKPIPSNIDQAI 495
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/83 (31%), Positives = 45/83 (54%)
Frame = +2
Query: 5 TRFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDM 184
T++Y +E E K+ L L+ L I Q++IFCN+ +V+ L + + ++ +H M
Sbjct: 337 TQYYAFVE-ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKM 395
Query: 185 DQREREVIMRQFRTGSSRVLITT 253
Q R + +FR G+ R L+ T
Sbjct: 396 VQDHRNRVFHEFRNGACRNLVCT 418
Score = 44.4 bits (100), Expect = 8e-05
Identities = 25/76 (32%), Positives = 33/76 (43%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDF 435
L RGID+Q V+ VIN+D P E+Y N VT DR + E
Sbjct: 420 LFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQE 479
Query: 436 YHTSIVEMPSDVANLI 483
T I +PS++ I
Sbjct: 480 LGTEIKPIPSNIDQAI 495
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/54 (37%), Positives = 35/54 (64%)
Frame = +2
Query: 92 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
++F T+R D L + + +F +++HGD Q+EREV +R F+TG + +L+ T
Sbjct: 412 LVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVAT 465
Score = 31.9 bits (69), Expect = 0.43
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENY 333
ARG+D+ V+ V+N+DLP++ ++Y
Sbjct: 469 ARGLDIPHVAHVVNFDLPNDIDDY 492
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/54 (37%), Positives = 35/54 (64%)
Frame = +2
Query: 92 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
++F T+R D L + + +F +++HGD Q+EREV +R F+TG + +L+ T
Sbjct: 412 LVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVAT 465
Score = 31.9 bits (69), Expect = 0.43
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENY 333
ARG+D+ V+ V+N+DLP++ ++Y
Sbjct: 469 ARGLDIPHVAHVVNFDLPNDIDDY 492
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/83 (31%), Positives = 44/83 (53%)
Frame = +2
Query: 5 TRFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDM 184
T++Y +E E K+ L L+ L I Q++IFCN+ +V+ L + + ++ +H M
Sbjct: 367 TQYYAFVE-ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKM 425
Query: 185 DQREREVIMRQFRTGSSRVLITT 253
Q R + FR G+ R L+ T
Sbjct: 426 VQDHRNRVFHDFRNGACRNLVCT 448
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/70 (34%), Positives = 30/70 (42%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDF 435
L RGID+Q V+ VIN+D P E+Y N VT DR + E
Sbjct: 450 LFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQE 509
Query: 436 YHTSIVEMPS 465
T I +PS
Sbjct: 510 LGTEIKPIPS 519
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 48.4 bits (110), Expect = 5e-06
Identities = 20/57 (35%), Positives = 34/57 (59%)
Frame = +2
Query: 83 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
A ++F T++ D L + + F + +HGD Q+EREV +R F+TG + +L+ T
Sbjct: 406 ALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVAT 462
Score = 31.9 bits (69), Expect = 0.43
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENY 333
ARG+D+ V+ V+N+DLP++ ++Y
Sbjct: 466 ARGLDIPHVAHVVNFDLPNDIDDY 489
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +2
Query: 38 WKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQ 217
W LE L + D ++F + + VD + + L F V+A+HGD DQ R +++
Sbjct: 462 WLLEKLPGMIDE---GDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQK 518
Query: 218 FRTGSSRVLITT 253
F++G VLI T
Sbjct: 519 FKSGVHHVLIAT 530
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 5/32 (15%)
Frame = +1
Query: 247 HHCLLA-----RGIDVQQVSCVINYDLPSNRE 327
HH L+A RG+D++ + V+NYD+ + +
Sbjct: 524 HHVLIATDVAARGLDIKSLKTVVNYDIAKDMD 555
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/57 (33%), Positives = 35/57 (61%)
Frame = +2
Query: 83 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
A ++F T+R D L + + F +++HGD Q+EREV ++ F++G + +L+ T
Sbjct: 419 ALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVAT 475
Score = 31.9 bits (69), Expect = 0.43
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENY 333
ARG+D+ V+ V+N+DLP++ ++Y
Sbjct: 479 ARGLDIPHVAHVVNFDLPNDIDDY 502
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/80 (27%), Positives = 40/80 (50%)
Frame = +2
Query: 14 YIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQR 193
++ + E K L L D L A++F NT++ D + +++ + V+ +HG Q
Sbjct: 554 HVIMMKESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQE 613
Query: 194 EREVIMRQFRTGSSRVLITT 253
+RE+ + FR VL+ T
Sbjct: 614 QREISLEGFRAKRYNVLVAT 633
Score = 36.7 bits (81), Expect = 0.015
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDF 435
++ RGID+ V+ VINYD+P + E Y +F+T D D++
Sbjct: 635 VVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQM 694
Query: 436 YHTSIVEMPSDVA 474
S +P ++A
Sbjct: 695 LVQSNSAVPPELA 707
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEA-DRRALKDIED 432
L+ RGID+++V+ VINYD+P + + Y FV A D L +++
Sbjct: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQE 406
Query: 433 FYHTSIVEMPSDV 471
+ I E+P +
Sbjct: 407 RFEVDIKELPEQI 419
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEA-DRRALKDIED 432
L+ RGID+++V+ VINYD+P + + Y FV A D L +++
Sbjct: 264 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQE 323
Query: 433 FYHTSIVEMPSDV 471
+ I E+P +
Sbjct: 324 RFEVDIKELPEQI 336
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEA-DRRALKDIED 432
L+ RGID+++V+ VINYD+P + + Y FV A D L +++
Sbjct: 347 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQE 406
Query: 433 FYHTSIVEMPSDV 471
+ I E+P +
Sbjct: 407 RFEVDIKELPEQI 419
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 44.8 bits (101), Expect = 6e-05
Identities = 17/64 (26%), Positives = 38/64 (59%)
Frame = +2
Query: 62 LYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRV 241
L D + ++ ++F +T++ D +T + + + ++HGD Q ER+ ++ +FR+G S +
Sbjct: 338 LEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPI 397
Query: 242 LITT 253
+ T
Sbjct: 398 MTAT 401
Score = 38.3 bits (85), Expect = 0.005
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDFYH 441
ARG+DV+ V VINYD P + E+Y F T A+ R K++ +
Sbjct: 405 ARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQ 464
Query: 442 TSIVEMPSDVANL 480
+ ++ ++A++
Sbjct: 465 EAGQKVSPELASM 477
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 44.4 bits (100), Expect = 8e-05
Identities = 20/81 (24%), Positives = 39/81 (48%)
Frame = +2
Query: 8 RFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMD 187
+ Y I + K++TL L + F N R++ + + R + MHGD+
Sbjct: 383 KHYYCISKHQHKVDTLRRCVHALDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLG 442
Query: 188 QREREVIMRQFRTGSSRVLIT 250
+ R ++++F+ G +VL+T
Sbjct: 443 KLGRSTVLKKFKNGEIKVLVT 463
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENY 333
L ARG+DV + V+N +LP++ +Y
Sbjct: 466 LSARGLDVAECDLVVNLELPTDAVHY 491
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/75 (30%), Positives = 37/75 (49%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDF 435
++ARG+D + ++CVINYD P + Y F TE D L++I +
Sbjct: 439 VIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNIANT 498
Query: 436 YHTSIVEMPSDVANL 480
+S E+PS + +L
Sbjct: 499 MMSSGCEVPSWIMSL 513
Score = 35.5 bits (78), Expect = 0.035
Identities = 21/74 (28%), Positives = 32/74 (43%)
Frame = +2
Query: 32 EEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIM 211
EE KL L + +IF ++ + L + + + +H D+ ERE +
Sbjct: 364 EEGKLLALRQSFAESLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAV 423
Query: 212 RQFRTGSSRVLITT 253
QFR G VLI T
Sbjct: 424 DQFRAGEKWVLIAT 437
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/57 (29%), Positives = 34/57 (59%)
Frame = +2
Query: 83 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
++ +IF T+R D +T + + + A+HGD Q ER+ ++ +F++G S ++ T
Sbjct: 411 SKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTAT 467
Score = 38.3 bits (85), Expect = 0.005
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENY 333
ARG+DV+ + CV+NYD P+ E+Y
Sbjct: 471 ARGLDVKDIKCVVNYDFPNTLEDY 494
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/57 (29%), Positives = 34/57 (59%)
Frame = +2
Query: 83 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
++ +IF T+R D +T + + + A+HGD Q ER+ ++ +F++G S ++ T
Sbjct: 411 SKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTAT 467
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +2
Query: 92 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
+IFC + VD + E + L+ A+HG DQ +RE + F+ G VL+ T
Sbjct: 401 LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVAT 454
Score = 31.1 bits (67), Expect = 0.76
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENY 333
++G+D + VINYD+P+ ENY
Sbjct: 458 SKGLDFPDIQHVINYDMPAEIENY 481
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +2
Query: 86 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
+ ++F T+R D L+ ++ R F A+HGD+ Q +RE + FR G +L+ T
Sbjct: 351 KCIVFTQTKRDADRLSYAL-ARSFKCEALHGDISQSQRERTLAGFRDGHFNILVAT 405
Score = 36.7 bits (81), Expect = 0.015
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDFYH 441
ARG+DV V +I+Y+LP+N E + ++ RA+K IE
Sbjct: 409 ARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVG 468
Query: 442 TSIVEMPS 465
+ E+PS
Sbjct: 469 SRFTELPS 476
>At4g37020.1 68417.m05244 expressed protein
Length = 212
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/75 (28%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Frame = +2
Query: 11 FYIAIELEEWKLETLCDLYDTLS---IAQAVIFCNTRRKVDWLTESMH-LRDFTVSAMHG 178
FY+A++ ++K+ET+ +L L V+ C++R ++D + S+ L +++A++
Sbjct: 23 FYLAVDRPQFKMETVVELLGVLGRRPWLPIVVCCSSRDELDAVCSSLSTLPYISLAALYS 82
Query: 179 DMDQREREVIMRQFR 223
D+ RER +++ +FR
Sbjct: 83 DLADRERAMVIEKFR 97
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/76 (25%), Positives = 32/76 (42%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDF 435
LL+ G +INY+LP+ +E Y N V + LK +E+
Sbjct: 139 LLSSGESSLSARVLINYELPTKKETY--TRRITTCLASGGIVINMVVGGEVTTLKSLEES 196
Query: 436 YHTSIVEMPSDVANLI 483
I EMP +++ ++
Sbjct: 197 SGILIAEMPINISEIL 212
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/83 (22%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +2
Query: 8 RFYIAIELEEWKLETLCD-LYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDM 184
++ + E+ K+E + D + + I Q +IF T+ + +++ + V+++HG++
Sbjct: 315 QYKVVCPKEQNKIEVIKDQIMELGDIGQTIIFVKTKASAQKVHKALAEMGYDVTSVHGNL 374
Query: 185 DQREREVIMRQFRTGSSRVLITT 253
+ +R+ I+++F+ ++VLI T
Sbjct: 375 TESDRDKIVKEFKECLTQVLIAT 397
Score = 31.5 bits (68), Expect = 0.57
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRE 327
++ARG D Q+V+ V+NY+LP+ E
Sbjct: 399 VIARGFDQQRVNLVVNYNLPTKYE 422
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +2
Query: 92 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
+IFC + VD + E + L+ A+HG DQ +R+ + F+ G VL+ T
Sbjct: 352 LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVAT 405
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENY 333
++G+D + VINYD+P ENY
Sbjct: 409 SKGLDFPDIQHVINYDMPGEIENY 432
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 GTRFYIAIELEEWKLETLCDLYDTLSIA-QAVIFCNTRRKVDWLTESMHLRDFTVSAMHG 178
G + Y K L DL + + ++F T+R D ++ ++ A+HG
Sbjct: 324 GIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALS-NSIATEALHG 382
Query: 179 DMDQREREVIMRQFRTGSSRVLITT 253
D+ Q +RE + FR G VL+ T
Sbjct: 383 DISQHQRERTLNAFRQGKFTVLVAT 407
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENY 333
+RG+D+ V VI+Y+LP++ E +
Sbjct: 411 SRGLDIPNVDLVIHYELPNDPETF 434
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +2
Query: 86 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
Q +IF +T+ V+++ L + S +GDMDQ R++ + +FR + +LI T
Sbjct: 273 QTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVT 328
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/71 (23%), Positives = 29/71 (40%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDF 435
+ ARGID+ + VIN+D P + + +FVT D + D+ F
Sbjct: 330 IAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLDLHLF 389
Query: 436 YHTSIVEMPSD 468
+ P++
Sbjct: 390 LSKPVRPAPTE 400
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +2
Query: 86 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
+ ++F T+R D L + + + A+HGD+ Q +RE + FR G+ +L+ T
Sbjct: 363 KCIVFTQTKRDADRLAFGL-AKSYKCEALHGDISQAQRERTLAGFRDGNFSILVAT 417
Score = 35.5 bits (78), Expect = 0.035
Identities = 24/78 (30%), Positives = 34/78 (43%)
Frame = +1
Query: 232 FSCLDHHCLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRR 411
FS L + ARG+DV V VI+Y+LP+N E + + R
Sbjct: 411 FSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTR 470
Query: 412 ALKDIEDFYHTSIVEMPS 465
A+K IE + E+PS
Sbjct: 471 AVKMIEKEVGSRFNELPS 488
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDFYH 441
ARG+DV+++ V+N+D P++ E+Y F++E D + D+
Sbjct: 675 ARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALE 734
Query: 442 TSIVEMPSDV 471
S +P DV
Sbjct: 735 LSEQPVPDDV 744
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDFYH 441
ARG+DV+++ V+N+D P++ E+Y F++E D + D+
Sbjct: 837 ARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALE 896
Query: 442 TSIVEMPSDVANLI*G 489
S +P D+ L G
Sbjct: 897 LSEQPVPDDLKALADG 912
Score = 32.3 bits (70), Expect = 0.33
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 92 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
++F ++ K D L M + ++HG DQ +RE + F+ +LI T
Sbjct: 780 LVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIAT 833
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 36.7 bits (81), Expect = 0.015
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +2
Query: 92 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
++F +T + V + TE M + D VS +HG MDQ R F +L+ T
Sbjct: 338 MVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGILLCT 391
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 35.5 bits (78), Expect = 0.035
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIED 432
+RG+D+ V VINYD+P + +Y + +TE D + + IE+
Sbjct: 363 SRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEE 419
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 34.7 bits (76), Expect = 0.062
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENY 333
+RG+D+ V VINYD+P+N ++Y
Sbjct: 321 SRGLDIPSVDVVINYDIPTNSKDY 344
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 34.7 bits (76), Expect = 0.062
Identities = 21/75 (28%), Positives = 32/75 (42%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDF 435
+L RG+D+ V VI +D+PS + Y FV E DR D+
Sbjct: 417 VLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAA 476
Query: 436 YHTSIVEMPSDVANL 480
+S +P ++ NL
Sbjct: 477 LKSSGAAIPKELINL 491
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 89 AVIFCNTRRKVDWLTESMHL-RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
AV++ ++R D L ++ + ++HG+ +ER +M F G VL++T
Sbjct: 360 AVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVST 415
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 34.7 bits (76), Expect = 0.062
Identities = 21/75 (28%), Positives = 32/75 (42%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDF 435
+L RG+D+ V VI +D+PS + Y FV E DR D+
Sbjct: 280 VLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAA 339
Query: 436 YHTSIVEMPSDVANL 480
+S +P ++ NL
Sbjct: 340 LKSSGAAIPKELINL 354
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 89 AVIFCNTRRKVDWLTESMHL-RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
AV++ ++R D L ++ + ++HG+ +ER +M F G VL++T
Sbjct: 223 AVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVST 278
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 34.3 bits (75), Expect = 0.081
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDI 426
ARG+D+ V VINY P ++Y FVT++DR LK I
Sbjct: 473 ARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVI 527
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +2
Query: 86 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
Q +IF T+ +V +E L D + A+HG++ Q +REV + FR G L+ T
Sbjct: 352 QTIIFAETKVQV---SELSGLLDGS-RALHGEIPQSQREVTLAGFRNGKFATLVAT 403
>At1g60930.1 68414.m06858 DNA helicase, putative strong similarity
to DNA Helicase recQl4B [Arabidopsis thaliana]
GI:11121451; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00570: HRDC domain
Length = 1024
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/55 (23%), Positives = 28/55 (50%)
Frame = +2
Query: 92 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTV 256
+I+C +R + +TE++ + + HG MD +R + +Q+ ++ TV
Sbjct: 630 IIYCLSRMDCEKVTEALRVFGHKAAFYHGSMDPGKRAFVQKQWSKDEINIICATV 684
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENY 333
L+ARGID++ V +I+Y LP + E Y
Sbjct: 561 LVARGIDIKNVRTIIHYKLPHSAEVY 586
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 31.9 bits (69), Expect = 0.43
Identities = 12/55 (21%), Positives = 28/55 (50%)
Frame = +2
Query: 92 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTV 256
+++C +R++ + + + R + H DMD RE + ++ +V++ TV
Sbjct: 317 IVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTV 371
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 31.1 bits (67), Expect = 0.76
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENY 333
ARG+D VS V+ LPS+RE Y
Sbjct: 399 ARGVDYPDVSLVVQMGLPSDREQY 422
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 31.1 bits (67), Expect = 0.76
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENY 333
ARG+D VS V+ LPS+RE Y
Sbjct: 701 ARGVDYPDVSLVVQMGLPSDREQY 724
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = +1
Query: 241 LDHHCLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALK 420
LD + RGID ++V VIN+D+P + Y + ++ + +
Sbjct: 390 LDAEFGVVRGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFE 449
Query: 421 DIEDF 435
DI+ F
Sbjct: 450 DIKSF 454
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +2
Query: 92 VIFCNTRRKVDW----LTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
V+F T VD+ L++ L+ + + HG MDQ+ R+ + F SS VL+ T
Sbjct: 269 VVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALASFTEASSGVLLCT 326
>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
helicase, putative
Length = 2172
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 173 HGDMDQREREVIMRQFRTGSSRVLIT--TVYWHVVLMYSKFPASSTMICHP 319
H + + +RE++ QFR G+ +VLI+ T+ W V L T + +P
Sbjct: 811 HAGLTRTDREIVENQFRWGNLQVLISTATLAWGVNLPAHTVIIKGTQVYNP 861
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENY 333
ARG+D +V C+I YD P Y
Sbjct: 410 ARGLDFPKVRCIIQYDCPGEATEY 433
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENY 333
ARG+D+ V VINY P E+Y
Sbjct: 427 ARGLDIPDVEVVINYTFPLTTEDY 450
>At5g01710.1 68418.m00088 expressed protein
Length = 513
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 122 DWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGS 232
DWL +S+ RDF V M D++ E ++I R +TG+
Sbjct: 426 DWLKKSVRERDFVVMKM--DVEGTEFDLIPRLIKTGA 460
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +1
Query: 259 LARGIDVQQVSCVINYDLP 315
L RG+DV+ V+ VINYD+P
Sbjct: 388 LTRGMDVKGVTNVINYDMP 406
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +2
Query: 92 VIFCNTRRKVDW----LTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
V+F T VD+ +++ L+ + HG MDQ+ R+ + F SS VL+ T
Sbjct: 242 VVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSGVLLCT 299
>At5g15390.1 68418.m01800 tRNA/rRNA methyltransferase (SpoU) family
protein similar to SP|P19396 tRNA
(Guanosine-2'-O-)-methyltransferase (EC 2.1.1.34)
{Escherichia coli O157:H7}; contains Pfam profile
PF00588: SpoU rRNA Methylase (RNA methyltransferase,
TrmH) family
Length = 350
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 173 HGDMDQREREVIMRQFRTGSSRVLITTVY 259
HGD+ + E+E++M +F SR I Y
Sbjct: 309 HGDLSEAEKEILMAEFSLRHSRSSICIAY 337
>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative
Length = 953
Score = 28.7 bits (61), Expect = 4.0
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = +2
Query: 155 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITT 253
+ +HG M ++E + +FR+G +++L++T
Sbjct: 797 YNCGLLHGRMKSDDKEEALNKFRSGETQILLST 829
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENY 333
ARG+D V+ V+ LP +RE Y
Sbjct: 373 ARGVDYPDVTLVLQVGLPKDREQY 396
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENY 333
+ ARGID+ + + + N+DLP +Y
Sbjct: 400 IAARGIDLPETTHIFNFDLPQTVTDY 425
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 256 LLARGIDVQQVSCVINYDLPSNRENY 333
+ ARGID+ + + + N+DLP +Y
Sbjct: 243 IAARGIDLPETTHIFNFDLPQTVTDY 268
>At4g01760.1 68417.m00229 DC1 domain-containing protein similar to
T15B16.10 similar to A. thaliana CHP-rich proteins
encoded by T10M13, GenBank accession number AF001308
Length = 667
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 4 HEILHCN*IRRMEAGNSV*PV*YTVYCTSCNFLQHPSQG 120
H ++ CN +RR + + + YCT+C+F H G
Sbjct: 14 HLMMPCNDLRRGDCCERLEAISDGYYCTTCDFFVHKKCG 52
>At5g42120.1 68418.m05128 lectin protein kinase family protein
contains Pfam domains PF00139: Legume lectins beta
domain and PF00069: Protein kinase domain
Length = 691
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 211 HDHFTLTLIHVSMHSRYSKVTQMHRFSEPIHLAT 110
H H++L + H+ + T HRFS P+ T
Sbjct: 3 HHHYSLVIFHLILFLSLDFPTLSHRFSPPLQNLT 36
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,622,103
Number of Sequences: 28952
Number of extensions: 288354
Number of successful extensions: 715
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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