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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00076
         (791 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P...   142   2e-34
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P...   142   3e-34
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P...    64   8e-11
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu...    58   5e-09
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu...    58   5e-09
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P...    47   1e-05
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P...    45   5e-05
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P...    38   0.008
At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kina...    33   0.29 
At5g19790.1 68418.m02352 AP2 domain-containing protein RAP2.11 (...    32   0.50 
At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kina...    30   1.5  
At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protei...    30   2.0  
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina...    29   4.7  
At5g54330.1 68418.m06766 hypothetical protein contains Pfam prof...    28   6.2  
At5g22720.1 68418.m02654 F-box family protein contains F-box dom...    28   8.2  

>At3g02530.1 68416.m00241 chaperonin, putative similar to
           SWISS-PROT:P80317- T-complex protein 1, zeta subunit
           (TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 535

 Score =  142 bits (344), Expect = 2e-34
 Identities = 64/87 (73%), Positives = 74/87 (85%)
 Frame = +3

Query: 501 GVRVNSVDDLTEDALGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKD 680
           G  VNSVDDLT D LG+AGLVYEHVLGE+K+TFVEQ KNP S TILIKGPN HT+ QIKD
Sbjct: 333 GEAVNSVDDLTPDCLGWAGLVYEHVLGEEKYTFVEQVKNPHSCTILIKGPNDHTIAQIKD 392

Query: 681 AVRDGLRAINNAIEDKCVIPGAAAFEI 761
           AVRDGLR++ N +ED+CV+ GA AFE+
Sbjct: 393 AVRDGLRSVKNTLEDECVVLGAGAFEV 419



 Score =  124 bits (300), Expect = 5e-29
 Identities = 56/86 (65%), Positives = 68/86 (79%)
 Frame = +1

Query: 256 FFYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDKTFVVINQKGIDPLSLDAFAK 435
           FFY +AE RE +V AER  +D+RV+KI+ LK K+C G D +FV++NQKGIDP SLD  A+
Sbjct: 251 FFYSNAEQREAMVTAERRSVDERVQKIIELKNKVCAGNDNSFVILNQKGIDPPSLDLLAR 310

Query: 436 EGIIGLRRAKRRNMERLALACGGSVL 513
           EGII LRRAKRRNMERL LACGG  +
Sbjct: 311 EGIIALRRAKRRNMERLVLACGGEAV 336



 Score =  120 bits (288), Expect = 1e-27
 Identities = 54/83 (65%), Positives = 68/83 (81%)
 Frame = +2

Query: 5   LADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPK 184
           LAD LTD  V++VL IR P +P+DL MVEIM M+HK   +T LV+GLV+DHG+RHPDM +
Sbjct: 167 LADQLTDIVVNSVLCIRKPQEPIDLFMVEIMHMRHKFDVDTRLVEGLVLDHGSRHPDMKR 226

Query: 185 RVENAYILTCNVSLEYEKTEVNS 253
           R EN +ILTCNVSLEYEK+E+N+
Sbjct: 227 RAENCHILTCNVSLEYEKSEINA 249


>At5g16070.1 68418.m01878 chaperonin, putative similar to
           SWISS-PROT:P80317 T-complex protein 1, zeta subunit
           (TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 535

 Score =  142 bits (343), Expect = 3e-34
 Identities = 64/87 (73%), Positives = 75/87 (86%)
 Frame = +3

Query: 501 GVRVNSVDDLTEDALGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKD 680
           G  VNSVDDLT ++LG+AGLVYEHVLGE+K+TFVEQ KNP S TILIKGPN HT+ QIKD
Sbjct: 332 GEAVNSVDDLTPESLGWAGLVYEHVLGEEKYTFVEQVKNPNSCTILIKGPNDHTIAQIKD 391

Query: 681 AVRDGLRAINNAIEDKCVIPGAAAFEI 761
           AVRDGLR++ N IED+CV+ GA AFE+
Sbjct: 392 AVRDGLRSVKNTIEDECVVLGAGAFEV 418



 Score =  124 bits (298), Expect = 9e-29
 Identities = 59/86 (68%), Positives = 69/86 (80%)
 Frame = +1

Query: 256 FFYKSAEDREKLVAAEREFIDQRVRKIVALKKKLCDGTDKTFVVINQKGIDPLSLDAFAK 435
           FFY +AE RE +V AER  +D+RV+KI+ LKKK+C G +  FVVINQKGIDP SLD  A+
Sbjct: 251 FFYSNAEQREAMVTAERRSVDERVKKIIELKKKVC-GDNDNFVVINQKGIDPPSLDLLAR 309

Query: 436 EGIIGLRRAKRRNMERLALACGGSVL 513
           EGIIGLRRAKRRNMERL LACGG  +
Sbjct: 310 EGIIGLRRAKRRNMERLVLACGGEAV 335



 Score =  116 bits (280), Expect = 1e-26
 Identities = 53/83 (63%), Positives = 67/83 (80%)
 Frame = +2

Query: 5   LADVLTDACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPK 184
           LAD LTD  V++VL IR P + +DL MVEIM M+HK   +T LV+GLV+DHG+RHPDM +
Sbjct: 167 LADQLTDIVVNSVLCIRKPEEAIDLFMVEIMHMRHKFDVDTRLVEGLVLDHGSRHPDMKR 226

Query: 185 RVENAYILTCNVSLEYEKTEVNS 253
           R EN +ILTCNVSLEYEK+E+N+
Sbjct: 227 RAENCHILTCNVSLEYEKSEINA 249


>At5g26360.1 68418.m03151 chaperonin, putative similar to
           SWISS-PROT:P50143- T-complex protein 1, gamma subunit
           (TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 555

 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 29/90 (32%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
 Frame = +3

Query: 504 VRVNSVDDLTEDALGF-AGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKD 680
           V VN  D+L E  +G  AGL     +G+D F+F+  CK P++ T+L++GP+K  + +++ 
Sbjct: 330 VIVNRPDELQESDIGTGAGLFEVKKIGDDFFSFIVDCKEPKACTVLLRGPSKDFINEVER 389

Query: 681 AVRDGLRAINNAIEDKCVIPGAAAFEIKLT 770
            ++D +    N I++  ++PG  A E+ ++
Sbjct: 390 NLQDAMSVARNIIKNPKLVPGGGATELTVS 419



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 25/80 (31%), Positives = 42/80 (52%)
 Frame = +1

Query: 274 EDREKLVAAEREFIDQRVRKIVALKKKLCDGTDKTFVVINQKGIDPLSLDAFAKEGIIGL 453
           ED E L+  E E+I+    +I+  K  L         VI +KG+  L+   F+K G+  +
Sbjct: 262 EDWEVLLKLEEEYIENICVQILKFKPDL---------VITEKGLSDLACHYFSKAGVSAI 312

Query: 454 RRAKRRNMERLALACGGSVL 513
           RR ++ +  R+A ACG  ++
Sbjct: 313 RRLRKTDNNRIAKACGAVIV 332


>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
           putative / TCP-1-epsilon, putative / chaperonin,
           putative identical to SWISS-PROT:O04450- T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
           thaliana]; strong similarity to SP|P54411 T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
           (TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
           TCP-1/cpn60 chaperonin family
          Length = 459

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
 Frame = +3

Query: 525 DLTEDALGFAGLVYEHVLG--EDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGL 698
           +LT + LG AG+V E   G  +++  ++E C N ++VT+ I+G NK  + + K ++ D L
Sbjct: 267 ELTPEKLGKAGVVREKSFGTTKERMLYIEHCANSKAVTVFIRGGNKMMIEETKRSIHDAL 326

Query: 699 RAINNAIEDKCVIPGAAAFEI 761
               N I +K ++ G  A EI
Sbjct: 327 CVARNLIRNKSIVYGGGAAEI 347



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
 Frame = +2

Query: 17  LTDACVDAVLTIRT-PGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVE 193
           L +  V AVL +     + V+L ++++         +T L+ G+++D    HP MPK++E
Sbjct: 105 LAEIAVKAVLAVADLERRDVNLDLIKVEGKVGGKLEDTELIYGILIDKDMSHPQMPKQIE 164

Query: 194 NAY--ILTCNVSLEYEKTE 244
           +A+  ILTC       KT+
Sbjct: 165 DAHIAILTCPFEPPKPKTK 183


>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
           putative / TCP-1-epsilon, putative / chaperonin,
           putative identical to SWISS-PROT:O04450- T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
           thaliana]; strong similarity to SP|P54411 T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
           (TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
           TCP-1/cpn60 chaperonin family
          Length = 535

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
 Frame = +3

Query: 525 DLTEDALGFAGLVYEHVLG--EDKFTFVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGL 698
           +LT + LG AG+V E   G  +++  ++E C N ++VT+ I+G NK  + + K ++ D L
Sbjct: 343 ELTPEKLGKAGVVREKSFGTTKERMLYIEHCANSKAVTVFIRGGNKMMIEETKRSIHDAL 402

Query: 699 RAINNAIEDKCVIPGAAAFEI 761
               N I +K ++ G  A EI
Sbjct: 403 CVARNLIRNKSIVYGGGAAEI 423



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
 Frame = +2

Query: 17  LTDACVDAVLTIRT-PGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVE 193
           L +  V AVL +     + V+L ++++         +T L+ G+++D    HP MPK++E
Sbjct: 181 LAEIAVKAVLAVADLERRDVNLDLIKVEGKVGGKLEDTELIYGILIDKDMSHPQMPKQIE 240

Query: 194 NAY--ILTCNVSLEYEKTE 244
           +A+  ILTC       KT+
Sbjct: 241 DAHIAILTCPFEPPKPKTK 259


>At3g18190.1 68416.m02314 chaperonin, putative similar to
           SWISS-PROT:P50991- T-complex protein 1, delta subunit
           (TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 536

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
 Frame = +2

Query: 14  VLTDACVDAVLTIRTPGKP--VDLHMVEIMEMKHKTATETVLVKGLVMDHG-ARHPDMPK 184
           +L    VDAVL++  P KP  VDL  ++I++    T  +T  VKGLV D   +R    P 
Sbjct: 178 LLAPLAVDAVLSVIDPEKPEIVDLRDIKIVKKLGGTVDDTHTVKGLVFDKKVSRAAGGPT 237

Query: 185 RVENAYILTCNVSLEYEKTEVNSA 256
           RVENA I      +   KT++  +
Sbjct: 238 RVENAKIAVIQFQISPPKTDIEQS 261


>At5g20890.1 68418.m02481 chaperonin, putative similar to
           SWISS-PROT:P78371- T-complex protein 1, beta subunit
           (TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 527

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
 Frame = +3

Query: 495 VRGVRVNSVDDLTEDA-LGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQ 671
           V G  + S  D  E   LG   L+ E ++GEDK      C+  Q+ +I+++G + H L +
Sbjct: 321 VTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGCEMGQACSIVLRGASHHVLDE 380

Query: 672 IKDAVRDGLRAINNAIEDKCVIPGAAAFEIKLTR 773
            + ++ D L  ++  + D  V+ G    E+ + +
Sbjct: 381 AERSLHDALCVLSQTVNDTRVLLGGGWPEMVMAK 414



 Score = 34.3 bits (75), Expect = 0.094
 Identities = 20/78 (25%), Positives = 41/78 (52%)
 Frame = +2

Query: 23  DACVDAVLTIRTPGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKRVENAY 202
           +  VDAV  ++      +L  ++I++    +  ++ L +G ++D        PKR+ENA 
Sbjct: 176 EMAVDAVFRLKGS---TNLEAIQIIKKPGGSLKDSFLDEGFILDKKIGI-GQPKRIENAN 231

Query: 203 ILTCNVSLEYEKTEVNSA 256
           IL  N +++ +K ++  A
Sbjct: 232 ILVANTAMDTDKVKIYGA 249



 Score = 27.9 bits (59), Expect = 8.2
 Identities = 20/75 (26%), Positives = 36/75 (48%)
 Frame = +1

Query: 286 KLVAAEREFIDQRVRKIVALKKKLCDGTDKTFVVINQKGIDPLSLDAFAKEGIIGLRRAK 465
           ++  AE+E +  +V+KI+        G +     +N++ I     + FA  GI+ +  A 
Sbjct: 261 EIEGAEKEKMKDKVKKIIG------HGIN---CFVNRQLIYNFPEELFADAGILAIEHAD 311

Query: 466 RRNMERLALACGGSV 510
              +ERL L  GG +
Sbjct: 312 FEGIERLGLVTGGEI 326


>At3g03960.1 68416.m00415 chaperonin, putative similar to
           SWISS-PROT:P42932- T-complex protein 1, theta subunit
           (TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 549

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +3

Query: 543 LGFAGLVYEHVLGEDKFTFVEQCKNPQSV-TILIKGPNKHTLTQIKDAVRDGLRAINNAI 719
           LG+   +    +G    T     +   S+ T++++G     L  ++ AV DG+       
Sbjct: 347 LGYVDSISVEEIGGVTVTIARNEEGGNSISTVVLRGSTDSILDDLERAVDDGVNTYKAMC 406

Query: 720 EDKCVIPGAAAFEIKLTR 773
            D  ++PGAAA EI+L +
Sbjct: 407 RDSRIVPGAAATEIELAQ 424


>At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to SP|Q9Z1T6 FYVE
           finger-containing phosphoinositide kinase (EC 2.7.1.68)
           (1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
           (PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF01363: FYVE zinc finger, PF00118:
           TCP-1/cpn60 chaperonin family
          Length = 1791

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 597 FVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGL-RAINNAIEDKCVIPGAAAFEIKL 767
           + E C  P   TIL++G N+  L ++K  V+ G+  A + A+E   +    A+ E+ L
Sbjct: 608 YFEHCPKPLGFTILLRGANEDELKKVKHVVQYGVFAAYHLALETSFLADEGASPELPL 665


>At5g19790.1 68418.m02352 AP2 domain-containing protein RAP2.11
           (RAP2.11) identical to AP2 domain containing protein
           RAP2.11 GI:2281647 from [Arabidopsis thaliana] ;contains
           Pfam profile: PF00847 AP2-domain
          Length = 253

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -2

Query: 631 VTDCGFLHCSTKVNLSSPSTCS*TRPAKPKASSVRSSTELTRTPRTLGLDVPY 473
           +TDC   + ST  +L++ +T + T  A P  +  R  + +   P T GL +PY
Sbjct: 115 LTDCNINYISTATSLTTTTTTT-TTTAIPLNNVYRPDSSVIGQPETEGLQLPY 166


>At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to SP|Q9Z1T6 FYVE
           finger-containing phosphoinositide kinase (EC 2.7.1.68)
           (1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
           (PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF01363: FYVE zinc finger, PF00118:
           TCP-1/cpn60 chaperonin family
          Length = 1756

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +3

Query: 597 FVEQCKNPQSVTILIKGPNKHTLTQIKDAVRDGL-RAINNAIEDKCVI-PGAAAFEIKL 767
           F + C  P   TIL+KG ++  L ++K  ++ G+  A + A+E   +   GA+  E+ L
Sbjct: 595 FFDGCPKPLGCTILLKGAHEDELKKVKHVIQYGVFAAYHLALETSFLADEGASIHELPL 653



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 119 TETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSASS 262
           +E+++VKG+V      H  M  ++E   +L    +LEY++   N  SS
Sbjct: 438 SESMVVKGVVCKKNVAHRRMTSKIEKPRLLILGGALEYQRIS-NQLSS 484


>At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 455

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 497 HARARRSILRLFAL-RSPIIPSLAKASSDKGSIP 399
           H  ARR +L L      P+IP+L K SS + S+P
Sbjct: 206 HESARRLLLELVEFSEKPLIPALPKPSSKESSLP 239


>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
           family protein low similarity to phosphatidylinositol
           3,5-kinase [Candida albicans] GI:14571648; contains Pfam
           profile PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase
          Length = 1648

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 122 ETVLVKGLVMDHGARHPDMPKRVENAYILTCNVSLEYEKTEVNSAS 259
           E++L++G+V      H  M  + +N  ++    SLEY++     AS
Sbjct: 396 ESILIRGIVCSKNITHKRMISQYKNPRVMLLAGSLEYQRVAGQLAS 441


>At5g54330.1 68418.m06766 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 356

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 755 EGRSTGYDAFIFNGVINSAEAVTNCIFDLCQGMLVGSLDEDGNRLW 618
           E RSTG + F+      +AE V        + ++V  LDE GN ++
Sbjct: 241 ESRSTGGEMFLVKWYKRTAEIVNGVAKMGTEALMVFKLDEQGNAVY 286


>At5g22720.1 68418.m02654 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 422

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +3

Query: 510 VNSVDDLTEDALGFAGLVYEHVLGEDKFTFVEQCKNPQSVTILIKGPNKHTLTQIK 677
           ++ V D+   +  FAGL Y     E + +FV +C       + IKG ++  + ++K
Sbjct: 305 ISGVSDMKISSQAFAGLRYWTPKKELRLSFVPRCLLSSLEFVEIKGCSRSNMERVK 360


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,180,091
Number of Sequences: 28952
Number of extensions: 320290
Number of successful extensions: 984
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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