Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00056
(818 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 156 1e-38
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 156 1e-38
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 156 1e-38
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 156 1e-38
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 156 1e-38
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 156 2e-38
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 40 0.002
At1g66100.1 68414.m07502 thionin, putative similar to thionin [A... 29 3.7
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 6.5
At1g72390.1 68414.m08373 expressed protein 28 6.5
At1g64880.1 68414.m07355 ribosomal protein S5 family protein con... 28 6.5
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 8.6
At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron... 28 8.6
At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron... 28 8.6
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 156 bits (379), Expect = 1e-38
Identities = 71/93 (76%), Positives = 82/93 (88%)
Frame = +1
Query: 484 GCEVQQGSPTAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAP 663
G + + TAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAP
Sbjct: 134 GVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 193
Query: 664 RGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGT 762
RG+GIV+A VPKK+LQ AG+ D +TS+RGST T
Sbjct: 194 RGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 226
Score = 141 bits (342), Expect = 4e-34
Identities = 65/95 (68%), Positives = 76/95 (80%)
Frame = +2
Query: 224 RQGRPERVGSFTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPV 403
R E+ TKLGRLV G I ++E IYL SLP+KE++IID +GP+L DEV+KIMPV
Sbjct: 47 RASEEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPV 106
Query: 404 QKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 508
QKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 107 QKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 141
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 156 bits (379), Expect = 1e-38
Identities = 71/93 (76%), Positives = 82/93 (88%)
Frame = +1
Query: 484 GCEVQQGSPTAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAP 663
G + + TAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAP
Sbjct: 133 GVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 192
Query: 664 RGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGT 762
RG+GIV+A VPKK+LQ AG+ D +TS+RGST T
Sbjct: 193 RGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 225
Score = 143 bits (347), Expect = 1e-34
Identities = 65/84 (77%), Positives = 74/84 (88%)
Frame = +2
Query: 257 TKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTR 436
TKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTR
Sbjct: 57 TKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTR 116
Query: 437 FKAFVAIGDNNGHIGLGVKCSKEV 508
FKAFV +GD NGH+GLGVKCSKEV
Sbjct: 117 FKAFVVVGDGNGHVGLGVKCSKEV 140
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 156 bits (379), Expect = 1e-38
Identities = 71/93 (76%), Positives = 82/93 (88%)
Frame = +1
Query: 484 GCEVQQGSPTAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAP 663
G + + TAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAP
Sbjct: 133 GVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 192
Query: 664 RGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGT 762
RG+GIV+A VPKK+LQ AG+ D +TS+RGST T
Sbjct: 193 RGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 225
Score = 143 bits (347), Expect = 1e-34
Identities = 65/84 (77%), Positives = 74/84 (88%)
Frame = +2
Query: 257 TKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTR 436
TKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTR
Sbjct: 57 TKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTR 116
Query: 437 FKAFVAIGDNNGHIGLGVKCSKEV 508
FKAFV +GD NGH+GLGVKCSKEV
Sbjct: 117 FKAFVVVGDGNGHVGLGVKCSKEV 140
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 156 bits (379), Expect = 1e-38
Identities = 71/93 (76%), Positives = 82/93 (88%)
Frame = +1
Query: 484 GCEVQQGSPTAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAP 663
G + + TAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAP
Sbjct: 133 GVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 192
Query: 664 RGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGT 762
RG+GIV+A VPKK+LQ AG+ D +TS+RGST T
Sbjct: 193 RGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 225
Score = 143 bits (347), Expect = 1e-34
Identities = 65/84 (77%), Positives = 74/84 (88%)
Frame = +2
Query: 257 TKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTR 436
TKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTR
Sbjct: 57 TKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTR 116
Query: 437 FKAFVAIGDNNGHIGLGVKCSKEV 508
FKAFV +GD NGH+GLGVKCSKEV
Sbjct: 117 FKAFVVVGDGNGHVGLGVKCSKEV 140
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 156 bits (379), Expect = 1e-38
Identities = 71/93 (76%), Positives = 82/93 (88%)
Frame = +1
Query: 484 GCEVQQGSPTAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAP 663
G + + TAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAP
Sbjct: 133 GVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 192
Query: 664 RGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGT 762
RG+GIV+A VPKK+LQ AG+ D +TS+RGST T
Sbjct: 193 RGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 225
Score = 143 bits (347), Expect = 1e-34
Identities = 65/84 (77%), Positives = 74/84 (88%)
Frame = +2
Query: 257 TKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTR 436
TKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTR
Sbjct: 57 TKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTR 116
Query: 437 FKAFVAIGDNNGHIGLGVKCSKEV 508
FKAFV +GD NGH+GLGVKCSKEV
Sbjct: 117 FKAFVVVGDGNGHVGLGVKCSKEV 140
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 156 bits (378), Expect = 2e-38
Identities = 70/93 (75%), Positives = 82/93 (88%)
Frame = +1
Query: 484 GCEVQQGSPTAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAP 663
G + + TAIRGAIILAKLSV+P+RRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAP
Sbjct: 125 GVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAP 184
Query: 664 RGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGT 762
RG+GIV+A VPKK+LQ AG+ D +TS+RGST T
Sbjct: 185 RGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 217
Score = 149 bits (361), Expect = 2e-36
Identities = 66/84 (78%), Positives = 77/84 (91%)
Frame = +2
Query: 257 TKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTR 436
TKLGRLV+EGKI K+E IYL SLP+KE++IID +GPSL DEV+KIMPVQKQTRAGQRTR
Sbjct: 49 TKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTR 108
Query: 437 FKAFVAIGDNNGHIGLGVKCSKEV 508
FKAF+ +GD+NGH+GLGVKCSKEV
Sbjct: 109 FKAFIVVGDSNGHVGLGVKCSKEV 132
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/44 (34%), Positives = 29/44 (65%)
Frame = +2
Query: 377 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 508
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEV 192
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = +1
Query: 547 SVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQ 726
S + RR + K T P + G G+ V L PA GTG+++ + +L+MAGV+
Sbjct: 199 SAIDARRNIVQVPMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVE 258
Query: 727 DCYTSARGS 753
+ GS
Sbjct: 259 NALGKQLGS 267
>At1g66100.1 68414.m07502 thionin, putative similar to thionin
[Arabidopsis thaliana] GI:1181533
Length = 134
Score = 29.1 bits (62), Expect = 3.7
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Frame = +1
Query: 445 ICCHWRQQRSYWFGCEVQQGSPTA-IRGAIILAKLSVLPVRRGYWGN---KIGKPHTVPC 612
ICC Q R+++ C GSP++ IR + L +S RGY + G T C
Sbjct: 26 ICCPSIQARTFYNACLFAVGSPSSCIRNSSCL-DISESTCPRGYTNDILENTGDAVTEYC 84
Query: 613 K---VTGKCGSVTV 645
K V+ CG++T+
Sbjct: 85 KLGCVSSVCGALTI 98
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 443 AFVAIGDNNGHIGLGVKCSKE 505
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At1g72390.1 68414.m08373 expressed protein
Length = 1088
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 757 QLNHELRCSSPVHQPSEE-AS*ELAQTQFQYHEGQESAGLLQNHT 626
QL H+ + P+ QPS++ A Q Q Q HE + A Q T
Sbjct: 938 QLQHQQQLQQPMSQPSQQLAQSPQQQQQLQQHEQPQQAQQQQQAT 982
>At1g64880.1 68414.m07355 ribosomal protein S5 family protein
contains similarity to 30S ribosomal protein S5
GI:6969105 from [Campylobacter jejuni]
Length = 515
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 598 HTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTW 765
HT+ + + L PAP TG+ + V K +L +AG ++ + GS ++
Sbjct: 427 HTIAHAIQTSYKKTKLYLWPAPTTTGMKAGRVVKTILLLAGFKNIKSKVIGSRNSY 482
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 598 HTVPCKVTGKCGSVTVRL 651
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
>At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 427
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +1
Query: 538 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMA 717
A +S+ P RG G P T C+ G + + RG+GIV +L+
Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256
Query: 718 GVQ 726
GV+
Sbjct: 257 GVE 259
>At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 408
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +1
Query: 538 AKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMA 717
A +S+ P RG G P T C+ G + + RG+GIV +L+
Sbjct: 198 AAMSICPTCRGV-GRVTIPPFTASCQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELVIPG 256
Query: 718 GVQ 726
GV+
Sbjct: 257 GVE 259
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,141,179
Number of Sequences: 28952
Number of extensions: 398271
Number of successful extensions: 1106
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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