Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00048
(381 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve... 140 2e-34
At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B) 138 9e-34
At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A) 138 9e-34
At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-r... 27 4.2
At1g35240.1 68414.m04370 transcriptional factor B3 family protei... 26 7.4
At5g59110.1 68418.m07407 subtilisin-like serine protease-related... 26 9.7
At3g11950.1 68416.m01473 UbiA prenyltransferase family protein c... 26 9.7
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 26 9.7
At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH) domain... 26 9.7
At1g43950.1 68414.m05070 auxin-responsive factor, putative simil... 26 9.7
At1g34310.1 68414.m04257 transcriptional factor B3 family protei... 26 9.7
>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
40S ribosomal protein S26
Length = 130
Score = 140 bits (340), Expect = 2e-34
Identities = 63/95 (66%), Positives = 74/95 (77%)
Frame = +2
Query: 5 KRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQ 184
KRRNGGR KH RGHVK +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY +
Sbjct: 4 KRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYT 63
Query: 185 LPKLYAKLHYCVSCAIHSKVVRNNRRKTEESVLLP 289
LPKLYAK YCVSCAIHS VVR R +T V P
Sbjct: 64 LPKLYAKTQYCVSCAIHSHVVR-VRSRTNRRVRTP 97
>At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B)
Length = 131
Score = 138 bits (335), Expect = 9e-34
Identities = 62/95 (65%), Positives = 73/95 (76%)
Frame = +2
Query: 5 KRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQ 184
KRRNGGR KH RGHV +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY +
Sbjct: 4 KRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYT 63
Query: 185 LPKLYAKLHYCVSCAIHSKVVRNNRRKTEESVLLP 289
LPKLYAK YCVSCAIHS VVR R +T V P
Sbjct: 64 LPKLYAKTQYCVSCAIHSHVVR-VRSRTNRRVRTP 97
>At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)
Length = 133
Score = 138 bits (335), Expect = 9e-34
Identities = 62/95 (65%), Positives = 73/95 (76%)
Frame = +2
Query: 5 KRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQ 184
KRRNGGR KH RGHV +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY +
Sbjct: 4 KRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYT 63
Query: 185 LPKLYAKLHYCVSCAIHSKVVRNNRRKTEESVLLP 289
LPKLYAK YCVSCAIHS VVR R +T V P
Sbjct: 64 LPKLYAKTQYCVSCAIHSHVVR-VRSRTNRRVRTP 97
>At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1136
Score = 27.1 bits (57), Expect = 4.2
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 53 AVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKL 196
++ C C VP+ +K + AVRD+ + ++ P F +P L
Sbjct: 572 SILCDRCEEIVPEISLARKIFV------CAVRDVFEGALLPTFDVPDL 613
>At1g35240.1 68414.m04370 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profiles: PF02309 AUX/IAA family, PF02362: B3 DNA
binding domain
Length = 615
Score = 26.2 bits (55), Expect = 7.4
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 125 IVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNNRRKTEESVLLPRVTSL 304
+V+A+ ++N+ + P+ LP +KL C AIH KV N+ E L+P T +
Sbjct: 56 LVDASTREELNE--LQPICDLP---SKLQ-CRVIAIHLKVENNSDETYAEITLMPDTTQV 109
>At5g59110.1 68418.m07407 subtilisin-like serine protease-related
similar to prepro-cucumisin GI:807698 from [Cucumis
melo], subtilisin-like protease C1 [Glycine max]
GI:13325079
Length = 172
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 17 GGRAKHGRGHVKAVRCTNCARCVPKDKA 100
G RA +G GHV + TN DKA
Sbjct: 2 GKRATYGAGHVDPIAATNPGLVYEMDKA 29
>At3g11950.1 68416.m01473 UbiA prenyltransferase family protein
contains Pfam profile PF01040: UbiA prenyltransferase
family
Length = 954
Score = 25.8 bits (54), Expect = 9.7
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 23 RAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASV 169
+ K ++KAV AR P+DK + K V +V+ AA + +++A +
Sbjct: 361 KEKPETSNLKAVTLEQTAREAPEDKLVSKEVDAAMVKEAA-KKVSEAEI 408
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 71 CARCVPKDKAIKKFVIRNIVEAAAVRDIN 157
CARCVP K I+ + +V +A D+N
Sbjct: 609 CARCVPMGKGIET-KLPEVVNCSARTDLN 636
>At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to clathrin assembly protein AP180 (GI:6492344) [Xenopus
laevis]
Length = 571
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 47 VKAVRCTNCARCVPKDKAIKK-FVIRNIVEAAA 142
V V+ TN C PKD+ ++K F ++ A A
Sbjct: 34 VAIVKATNHVECPPKDRHLRKIFAATSVTRARA 66
>At1g43950.1 68414.m05070 auxin-responsive factor, putative similar
to auxin response factor 9 [Arabidopsis thaliana]
GI:4580575; contains Pfam profile PF02362: B3 DNA
binding domain; non-consensus TT donor splice site at
exon 5
Length = 222
Score = 25.8 bits (54), Expect = 9.7
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +2
Query: 125 IVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNNRRKTEESVLLPRVTSL 304
+VEA+ ++N+ + P LP +KL C AIH KV N+ E L+P T +
Sbjct: 56 LVEASTREELNE--LQPNCDLP---SKLQ-CRVIAIHLKVENNSDETYVEITLMPDTTQV 109
>At1g34310.1 68414.m04257 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profile: PF02309 AUX/IAA family
Length = 593
Score = 25.8 bits (54), Expect = 9.7
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +2
Query: 125 IVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNNRRKTEESVLLPRVTSL 304
+VE + ++N+ + P+ LP +KL C AIH KV N+ E L+P T +
Sbjct: 56 LVETSTREELNE--LQPICDLP---SKLQ-CRVIAIHLKVENNSDETYAEITLMPDTTQV 109
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,510,583
Number of Sequences: 28952
Number of extensions: 139449
Number of successful extensions: 343
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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