Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00044
(638 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62030.1 68416.m06967 peptidyl-prolyl cis-trans isomerase, ch... 92 2e-19
At5g58710.1 68418.m07355 peptidyl-prolyl cis-trans isomerase, pu... 91 4e-19
At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase cyc... 91 6e-19
At2g29960.1 68415.m03644 peptidyl-prolyl cis-trans isomerase / c... 91 8e-19
At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase, pu... 85 3e-17
At4g38740.1 68417.m05487 peptidyl-prolyl cis-trans isomerase / c... 76 2e-14
At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase cyc... 76 2e-14
At2g21130.1 68415.m02507 peptidyl-prolyl cis-trans isomerase / c... 76 2e-14
At2g15790.1 68415.m01810 peptidyl-prolyl cis-trans isomerase / c... 75 4e-14
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc... 75 5e-14
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 75 5e-14
At4g34960.1 68417.m04955 peptidyl-prolyl cis-trans isomerase, pu... 73 2e-13
At3g56070.1 68416.m06231 peptidyl-prolyl cis-trans isomerase, pu... 73 2e-13
At2g16600.1 68415.m01906 peptidyl-prolyl cis-trans isomerase, cy... 72 4e-13
At2g38730.1 68415.m04756 peptidyl-prolyl cis-trans isomerase, pu... 71 7e-13
At4g34870.1 68417.m04946 peptidyl-prolyl cis-trans isomerase / c... 71 9e-13
At2g36130.1 68415.m04436 peptidyl-prolyl cis-trans isomerase, pu... 62 2e-10
At1g01940.1 68414.m00112 peptidyl-prolyl cis-trans isomerase cyc... 55 3e-08
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 55 5e-08
At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase cyc... 47 1e-05
At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase cyc... 46 2e-05
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 45 5e-05
At1g74070.1 68414.m08579 peptidyl-prolyl cis-trans isomerase cyc... 42 5e-04
At3g66654.3 68416.m00779 peptidyl-prolyl cis-trans isomerase cyc... 38 0.004
At3g66654.2 68416.m00778 peptidyl-prolyl cis-trans isomerase cyc... 38 0.004
At3g66654.1 68416.m00777 peptidyl-prolyl cis-trans isomerase cyc... 38 0.004
At5g35100.1 68418.m04153 peptidyl-prolyl cis-trans isomerase cyc... 38 0.006
At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase, pu... 38 0.006
At2g47320.1 68415.m05907 peptidyl-prolyl cis-trans isomerase cyc... 36 0.030
>At3g62030.1 68416.m06967 peptidyl-prolyl cis-trans isomerase,
chloroplast / cyclophilin / rotamase / cyclosporin
A-binding protein (ROC4) identical to peptidyl-prolyl
cis-trans isomerase, chloroplast precursor, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Arabidopsis thaliana] SWISS-PROT:P34791; identical to
cDNA nuclear-encoded chloroplast stromal cyclophilin
(ROC4) GI:405130
Length = 260
Score = 92.3 bits (219), Expect = 2e-19
Identities = 46/82 (56%), Positives = 52/82 (63%)
Frame = +3
Query: 264 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRS 443
G IV+GLFG+ VPKT ENF L + GYKGS FHR+IK+FMIQ S
Sbjct: 109 GRIVMGLFGEVVPKTVENFRALCTGEKKYGYKGSSFHRIIKDFMIQGGDFTEGNGTGGIS 168
Query: 444 IYGERFEDENFKLKHYGAGWLS 509
IYG +FEDENF LKH G G LS
Sbjct: 169 IYGAKFEDENFTLKHTGPGILS 190
Score = 70.5 bits (165), Expect = 9e-13
Identities = 30/46 (65%), Positives = 39/46 (84%)
Frame = +2
Query: 500 LVIMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
++ MANAG +TNGSQFFI TVKT WLD +HVVFG+V+EGM +V+ +
Sbjct: 188 ILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIEGMKLVRTL 233
>At5g58710.1 68418.m07355 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
(ROC7) similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 204
Score = 91.5 bits (217), Expect = 4e-19
Identities = 48/89 (53%), Positives = 55/89 (61%), Gaps = 7/89 (7%)
Frame = +3
Query: 264 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVIKNFMIQXXXXXXX 422
G IV+GLFGKTVPKT ENF L +G G YKGS FHR+I +FM+Q
Sbjct: 49 GRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHG 108
Query: 423 XXXXXRSIYGERFEDENFKLKHYGAGWLS 509
SIYGE+F DENFKLKH G G+LS
Sbjct: 109 NGMGGESIYGEKFADENFKLKHTGPGFLS 137
Score = 81.4 bits (192), Expect = 5e-16
Identities = 36/43 (83%), Positives = 39/43 (90%)
Frame = +2
Query: 509 MANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
MANAG+DTNGSQFFITTV T WLDGRHVVFGKV+ GMDVV K+
Sbjct: 138 MANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKV 180
>At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 259
Score = 91.1 bits (216), Expect = 6e-19
Identities = 44/82 (53%), Positives = 52/82 (63%)
Frame = +3
Query: 264 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRS 443
G IVIGL+G VP+T ENF L +G GYKGS FHRVI++FMIQ +S
Sbjct: 107 GRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGSTFHRVIRDFMIQGGDFEKGNGTGGKS 166
Query: 444 IYGERFEDENFKLKHYGAGWLS 509
+YG F+DENFKL H G G LS
Sbjct: 167 VYGRTFKDENFKLSHVGPGVLS 188
Score = 76.2 bits (179), Expect = 2e-14
Identities = 33/43 (76%), Positives = 39/43 (90%)
Frame = +2
Query: 509 MANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
MANAG +TNGSQFFI T+KT WLDGRHVVFG+V+EGM+VV+ I
Sbjct: 189 MANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLI 231
>At2g29960.1 68415.m03644 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP5) / rotamase identical to cyclophilin
[Arabidopsis thaliana] gi|2443755|gb|AAB71401
Length = 201
Score = 90.6 bits (215), Expect = 8e-19
Identities = 48/89 (53%), Positives = 54/89 (60%), Gaps = 7/89 (7%)
Frame = +3
Query: 264 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVIKNFMIQXXXXXXX 422
G +VIGLFGK VPKT ENF L +G G YKGSKFHR+I +FMIQ
Sbjct: 46 GRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHG 105
Query: 423 XXXXXRSIYGERFEDENFKLKHYGAGWLS 509
SIYG++F DENFKLKH G G LS
Sbjct: 106 NGMGGESIYGQKFADENFKLKHTGPGVLS 134
Score = 81.8 bits (193), Expect = 3e-16
Identities = 36/43 (83%), Positives = 40/43 (93%)
Frame = +2
Query: 509 MANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
MAN+G+DTNGSQFFITTV T WLDGRHVVFGKV++GMDVV KI
Sbjct: 135 MANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKI 177
>At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 228
Score = 85.4 bits (202), Expect = 3e-17
Identities = 45/89 (50%), Positives = 52/89 (58%), Gaps = 7/89 (7%)
Frame = +3
Query: 264 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVIKNFMIQXXXXXXX 422
G I+IGLFG VPKT ENF L +G G +KGS FHR+I FMIQ
Sbjct: 73 GRILIGLFGNIVPKTAENFRSLCTGEKGVGNMGKPLYFKGSSFHRIIPGFMIQGGDFTRG 132
Query: 423 XXXXXRSIYGERFEDENFKLKHYGAGWLS 509
SIYG++F DENFKLKH G G+LS
Sbjct: 133 DGRGGESIYGDKFADENFKLKHTGPGFLS 161
Score = 77.0 bits (181), Expect = 1e-14
Identities = 34/43 (79%), Positives = 38/43 (88%)
Frame = +2
Query: 509 MANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
MAN+G D+NGSQFFITTV T WLDG HVVFGKVL GM+VV+KI
Sbjct: 162 MANSGPDSNGSQFFITTVTTSWLDGHHVVFGKVLSGMEVVRKI 204
>At4g38740.1 68417.m05487 peptidyl-prolyl cis-trans isomerase /
cyclophilin / rotamase / cyclosporin A-binding protein
(ROC1) identical to SP|P34790 Peptidyl-prolyl cis-trans
isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin)
(Cyclosporin A-binding protein) {Arabidopsis thaliana}
Length = 172
Score = 76.2 bits (179), Expect = 2e-14
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = +2
Query: 500 LVIMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
++ MANAG +TNGSQFFI TVKT WLDG+HVVFG+V+EG+DVV+ I
Sbjct: 104 ILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAI 149
Score = 72.9 bits (171), Expect = 2e-13
Identities = 41/89 (46%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Frame = +3
Query: 264 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVIKNFMIQXXXXXXX 422
G IV+ L+ P+T ENF L +G G +KGSKFHRVI NFM Q
Sbjct: 18 GRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKFHRVIPNFMCQGGDFTAG 77
Query: 423 XXXXXRSIYGERFEDENFKLKHYGAGWLS 509
SIYG +FEDENF+ KH G G LS
Sbjct: 78 NGTGGESIYGSKFEDENFERKHTGPGILS 106
>At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to SP|P87051
Peptidyl-prolyl cis-trans isomerase cyp2 (EC 5.2.1.8)
(Cyclophilin cyp2) {Schizosaccharomyces pombe}; contains
Pfam profiles PF00160: peptidyl-prolyl cis-trans
isomerase cyclophilin-type, PF00400: WD domain G-beta
repeat
Length = 631
Score = 76.2 bits (179), Expect = 2e-14
Identities = 33/43 (76%), Positives = 38/43 (88%)
Frame = +2
Query: 509 MANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
MANAG +TNGSQFFITTV TPWLD +H VFG+V++GMDVVQ I
Sbjct: 564 MANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQGI 606
Score = 41.9 bits (94), Expect = 3e-04
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +3
Query: 261 IGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXR 440
+G I + L+ + PKT ENF + Y FHRVI+ FMIQ +
Sbjct: 484 LGDIHMKLYPEECPKTVENFTTHCRNGY---YDNHLFHRVIRGFMIQ-TGDPLGDGTGGQ 539
Query: 441 SIYGERFEDENFK-LKH 488
SI+G FEDE K L+H
Sbjct: 540 SIWGREFEDEFHKSLRH 556
>At2g21130.1 68415.m02507 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP2) / rotamase identical to cyclophilin
[Arabidopsis thaliana] gi|2443757|gb|AAB71402; similar
to peptidyl-prolyl cis-trans isomerase, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Arabidopsis thaliana] SWISS-PROT:P34790
Length = 174
Score = 76.2 bits (179), Expect = 2e-14
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = +2
Query: 500 LVIMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
++ MANAG +TNGSQFFI TVKT WLDG+HVVFG+V+EG+DVV+ I
Sbjct: 105 ILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAI 150
Score = 71.7 bits (168), Expect = 4e-13
Identities = 41/89 (46%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Frame = +3
Query: 264 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVIKNFMIQXXXXXXX 422
G IV+ L+ PKT ENF L +G G +KGS FHRVI NFM Q
Sbjct: 19 GKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVIPNFMCQGGDFTKG 78
Query: 423 XXXXXRSIYGERFEDENFKLKHYGAGWLS 509
SIYG +FEDENF+ KH G G LS
Sbjct: 79 NGTGGESIYGAKFEDENFERKHTGPGILS 107
>At2g15790.1 68415.m01810 peptidyl-prolyl cis-trans isomerase /
cyclophilin-40 (CYP40) / rotamase identical to
cyclophilin-40 [Arabidopsis thaliana] GI:13442983;
supporting cDNA gi|13442982|gb|AY026065.1|
Length = 361
Score = 74.9 bits (176), Expect = 4e-14
Identities = 43/90 (47%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Frame = +3
Query: 264 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHRVIKNFMIQXXXXXX 419
G IVI L+ VPKT ENF L +G G YKG++FHRVIK FMIQ
Sbjct: 18 GRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRFHRVIKGFMIQGGDISA 77
Query: 420 XXXXXXRSIYGERFEDENFKLKHYGAGWLS 509
SIYG +F+DENF+LKH G LS
Sbjct: 78 NDGTGGESIYGLKFDDENFELKHERKGMLS 107
Score = 66.1 bits (154), Expect = 2e-11
Identities = 29/46 (63%), Positives = 38/46 (82%)
Frame = +2
Query: 500 LVIMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
++ MAN+G +TNGSQFFITT +T LDG+HVVFG+V +GM VV+ I
Sbjct: 105 MLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVTKGMGVVRSI 150
>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 387
Score = 74.5 bits (175), Expect = 5e-14
Identities = 44/93 (47%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Frame = +3
Query: 255 DNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHRVIKNFMIQXXX 410
D + IVI LF VPKT ENF L G G +KGS FHRVIK FM Q
Sbjct: 18 DPVQRIVIELFADVVPKTAENFRALCTGEAGVGKSTGKPLHFKGSSFHRVIKGFMAQGGD 77
Query: 411 XXXXXXXXXRSIYGERFEDENFKLKHYGAGWLS 509
SIYG +F DENF+L H GAG LS
Sbjct: 78 FSNGNGTGGESIYGGKFSDENFRLDHDGAGVLS 110
Score = 63.7 bits (148), Expect = 1e-10
Identities = 28/43 (65%), Positives = 35/43 (81%)
Frame = +2
Query: 509 MANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
MAN G +TNGSQFFI + P LDG+HVVFGKV+EGM V++K+
Sbjct: 111 MANCGPNTNGSQFFILFKRQPHLDGKHVVFGKVVEGMAVIKKM 153
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 74.5 bits (175), Expect = 5e-14
Identities = 44/93 (47%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Frame = +3
Query: 255 DNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHRVIKNFMIQXXX 410
D + IVI LF VPKT ENF L G G +KGS FHRVIK FM Q
Sbjct: 18 DPVQRIVIELFADVVPKTAENFRALCTGEAGVGKSTGKPLHFKGSSFHRVIKGFMAQGGD 77
Query: 411 XXXXXXXXXRSIYGERFEDENFKLKHYGAGWLS 509
SIYG +F DENF+L H GAG LS
Sbjct: 78 FSNGNGTGGESIYGGKFSDENFRLDHDGAGVLS 110
Score = 63.7 bits (148), Expect = 1e-10
Identities = 28/43 (65%), Positives = 35/43 (81%)
Frame = +2
Query: 509 MANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
MAN G +TNGSQFFI + P LDG+HVVFGKV+EGM V++K+
Sbjct: 111 MANCGPNTNGSQFFILFKRQPHLDGKHVVFGKVVEGMAVIKKM 153
>At4g34960.1 68417.m04955 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 224
Score = 72.5 bits (170), Expect = 2e-13
Identities = 44/104 (42%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Frame = +3
Query: 261 IGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVIKNFMIQXXXXXX 419
+G IVIGL+G VPKT ENF L +G+ YKG+ FHR+I F+IQ
Sbjct: 60 LGRIVIGLYGTVVPKTVENFRALCTGEKGKTSSGKPLHYKGTPFHRIISGFVIQGGDIIH 119
Query: 420 XXXXXXRSIYGERFEDENFKLKHYGAGWLSWLMQAKTQMDLNFS 551
SIYG F DENFK++H AG ++ A T D N S
Sbjct: 120 GDGKSSDSIYGGTFPDENFKIQHSHAGMVA---MANTGPDSNGS 160
Score = 69.7 bits (163), Expect = 2e-12
Identities = 30/43 (69%), Positives = 35/43 (81%)
Frame = +2
Query: 500 LVIMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVV 628
+V MAN G D+NGSQFFITTVK WL+G HVV GKV++GMD V
Sbjct: 147 MVAMANTGPDSNGSQFFITTVKASWLEGEHVVLGKVIQGMDNV 189
>At3g56070.1 68416.m06231 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to peptidyl-prolyl cis-trans isomerase, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Catharanthus roseus] SWISS-PROT:Q39613
Length = 176
Score = 72.5 bits (170), Expect = 2e-13
Identities = 40/89 (44%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Frame = +3
Query: 264 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVIKNFMIQXXXXXXX 422
G +V+ LF P+T NF L G G YKGS FHR+I FM Q
Sbjct: 18 GRVVMELFADVTPRTANNFRALCTGENGIGKAGKALHYKGSAFHRIIPGFMCQGGDFTRG 77
Query: 423 XXXXXRSIYGERFEDENFKLKHYGAGWLS 509
SIYG +FEDENFKLKH G G LS
Sbjct: 78 NGTGGESIYGSKFEDENFKLKHTGPGILS 106
Score = 68.5 bits (160), Expect = 3e-12
Identities = 29/44 (65%), Positives = 38/44 (86%)
Frame = +2
Query: 500 LVIMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQ 631
++ MAN+G +TNGSQFFI T KT WLDG+HVVFGKV++G +VV+
Sbjct: 104 ILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVK 147
>At2g16600.1 68415.m01906 peptidyl-prolyl cis-trans isomerase,
cytosolic / cyclophilin / rotamase (ROC3) identical to
cytosolic cyclophilin [Arabidopsis thaliana] GI:1305455
Length = 173
Score = 71.7 bits (168), Expect = 4e-13
Identities = 31/46 (67%), Positives = 40/46 (86%)
Frame = +2
Query: 500 LVIMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
++ MANAG +TNGSQFFI T KT WLDG+HVVFG+V+EG++VV+ I
Sbjct: 105 ILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDI 150
Score = 68.9 bits (161), Expect = 3e-12
Identities = 40/89 (44%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Frame = +3
Query: 264 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVIKNFMIQXXXXXXX 422
G IV+ L+ T P+T ENF L G G YKGS FHRVI FM Q
Sbjct: 19 GRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHRVIPKFMCQGGDFTAG 78
Query: 423 XXXXXRSIYGERFEDENFKLKHYGAGWLS 509
SIYG +F+DENF KH G G LS
Sbjct: 79 NGTGGESIYGSKFKDENFIKKHTGPGILS 107
>At2g38730.1 68415.m04756 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Homo sapiens]
gi|3647230|gb|AAC60793
Length = 199
Score = 70.9 bits (166), Expect = 7e-13
Identities = 40/87 (45%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Frame = +3
Query: 264 GTIVIGLFGKTVPKTTENFFQLAQ---KPEGE--GYKGSKFHRVIKNFMIQXXXXXXXXX 428
G I + LF PKT ENF Q + G+ GYK +FHRVIK+FM+Q
Sbjct: 46 GRIKMELFADIAPKTAENFRQFCTGELRKAGKPLGYKECQFHRVIKDFMVQSGDFLKNDG 105
Query: 429 XXXRSIYGERFEDENFKLKHYGAGWLS 509
SIYG +FEDENF KH G G LS
Sbjct: 106 SGCMSIYGHKFEDENFTAKHTGPGLLS 132
Score = 60.5 bits (140), Expect = 9e-10
Identities = 28/47 (59%), Positives = 37/47 (78%), Gaps = 1/47 (2%)
Frame = +2
Query: 500 LVIMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL-EGMDVVQKI 637
L+ MAN+G +TNG QFFIT K WLD +HVVFG+VL +G+ V++KI
Sbjct: 130 LLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVMRKI 176
>At4g34870.1 68417.m04946 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP1) / rotamase identical to cyclophilin
(CYP1) gi|992643|gb|AAA75512; similar to peptidyl-prolyl
cis-trans isomerase, PPIase (cyclophilin, cyclosporin
A-binding protein) [Catharanthus roseus]
SWISS-PROT:Q39613
Length = 172
Score = 70.5 bits (165), Expect = 9e-13
Identities = 30/46 (65%), Positives = 40/46 (86%)
Frame = +2
Query: 500 LVIMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
++ MAN+G +TNGSQFFI T KT WLDG+HVVFG+V++G+DVV+ I
Sbjct: 104 ILSMANSGPNTNGSQFFICTDKTSWLDGKHVVFGQVVKGLDVVKAI 149
Score = 68.5 bits (160), Expect = 3e-12
Identities = 41/90 (45%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Frame = +3
Query: 261 IGTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVIKNFMIQXXXXXX 419
IG I + LF T P T ENF L +G G +KGS FHRVI FM Q
Sbjct: 17 IGRIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIFHRVIPGFMCQGGDFTA 76
Query: 420 XXXXXXRSIYGERFEDENFKLKHYGAGWLS 509
SIYG +F+DENF KH GAG LS
Sbjct: 77 KNGTGGESIYGAKFKDENFIKKHTGAGILS 106
>At2g36130.1 68415.m04436 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
contains Pfam domain, PF00160: peptidyl-prolyl cis-trans
isomerase, cyclophilin-type
Length = 164
Score = 62.5 bits (145), Expect = 2e-10
Identities = 25/46 (54%), Positives = 36/46 (78%)
Frame = +2
Query: 500 LVIMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
++ MANAG +TNGSQFFIT P LDG+H +FG+V GM+V++++
Sbjct: 95 ILSMANAGPNTNGSQFFITLAPQPSLDGKHTIFGRVCRGMEVIKRL 140
Score = 55.2 bits (127), Expect = 3e-08
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXX 437
++G + ++ K P+T NF +L+++ Y FHR++K+F++Q
Sbjct: 17 SMGPFTVEMYYKHSPRTCRNFLELSRRGY---YDNVLFHRIVKDFIVQ-GGDPTGTGRGG 72
Query: 438 RSIYGERFEDE-NFKLKHYGAGWLS 509
SIYG +FEDE N +LKH GAG LS
Sbjct: 73 ESIYGSKFEDEINKELKHTGAGILS 97
>At1g01940.1 68414.m00112 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 160
Score = 55.2 bits (127), Expect = 3e-08
Identities = 23/43 (53%), Positives = 33/43 (76%)
Frame = +2
Query: 500 LVIMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVV 628
++ MAN+G +TNGSQFFIT K P L+G + +FGKV+ G +V+
Sbjct: 86 MLSMANSGPNTNGSQFFITYAKQPHLNGLYTIFGKVIHGFEVL 128
Score = 49.6 bits (113), Expect = 2e-06
Identities = 34/85 (40%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXX 437
N+G I +F VPK+ ENF L Y G+ FHR IK FMIQ
Sbjct: 8 NLGDIKCEIFCDEVPKSAENFLALCASGY---YDGTIFHRNIKGFMIQ-GGDPKGTGKGG 63
Query: 438 RSIYGERFEDE-NFKLKHYGAGWLS 509
SI+G++F DE LKH G LS
Sbjct: 64 TSIWGKKFNDEIRDSLKHNARGMLS 88
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 54.8 bits (126), Expect = 5e-08
Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Frame = +3
Query: 255 DNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHRVIKNFMIQXXX 410
D T+V LF + PKT+ENF L +G G YKGS FHR++K Q
Sbjct: 18 DPAETMVFELFPEVAPKTSENFRALCTGEKGIGPRSGKPLHYKGSFFHRIMKGSSAQAGD 77
Query: 411 XXXXXXXXXRSIYGERFEDENFKLKHYGAGWLSWLMQAKTQMDLNF 548
SIY +F DE+ KL+H G LS + + + +F
Sbjct: 78 FVNRNGTAGESIYAGKFPDESPKLRHEETGLLSMSIADRDKFGSHF 123
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/46 (41%), Positives = 30/46 (65%)
Frame = +2
Query: 500 LVIMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
L+ M+ A +D GS F IT LD +VVFGK+++G ++++KI
Sbjct: 108 LLSMSIADRDKFGSHFHITFRPNQQLDRNNVVFGKLIQGKEILKKI 153
>At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 595
Score = 46.8 bits (106), Expect = 1e-05
Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +3
Query: 264 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRS 443
G + I L P+ ENF L ++ Y G FHR I+NFMIQ S
Sbjct: 353 GDLNIELHCDIAPRACENFITLCERGY---YNGVAFHRSIRNFMIQ-GGDPTGTGKGGES 408
Query: 444 IYGERFEDE-NFKLKHYGAGWLS 509
I+G+ F+DE N KL H G G +S
Sbjct: 409 IWGKPFKDEPNSKLLHSGRGVVS 431
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +2
Query: 500 LVIMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGM 619
+V MAN+G TNGSQFF+ L+ +H VFG V+ G+
Sbjct: 429 VVSMANSGPHTNGSQFFVLYKSATHLNYKHTVFGGVVGGL 468
>At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 504
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/37 (56%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Frame = +2
Query: 500 LVIMANAGK-DTNGSQFFITTVKTPWLDGRHVVFGKV 607
+V MANA ++NGSQFF T K WLD +H +FGKV
Sbjct: 98 IVAMANASSPNSNGSQFFFTLDKCDWLDKKHTIFGKV 134
Score = 37.5 bits (83), Expect = 0.007
Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 264 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGY-KGSKFHRVIKNFMIQXXXXXXXXXXXXR 440
G I + L+ K PK+ NF QL EGY + FHRVI F++Q
Sbjct: 22 GPIDVELWPKEAPKSVRNFVQLCL----EGYFDNTIFHRVIPGFLVQGGDPTGSGTGGD- 76
Query: 441 SIYGERFEDE 470
SIYG F DE
Sbjct: 77 SIYGGVFADE 86
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +2
Query: 503 VIMANAGKDTNGSQFFITTVKT-PWLDGRHVVFGKVLEGMDVVQKI 637
V MA+ G++ N SQF+ T +LDG+H VFG++ EG D + +I
Sbjct: 94 VAMASGGENLNASQFYFTLRDDLDYLDGKHTVFGQIAEGFDTLTRI 139
Score = 31.5 bits (68), Expect = 0.49
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Frame = +3
Query: 258 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ---XXXXXXXXX 428
++G IVI L P T +NF +L + + Y G FH V K+F Q
Sbjct: 8 SLGDIVIDLHSDKCPLTCKNFLKLCKI---KYYNGCLFHTVQKDFTAQTGDPTGTGAGGD 64
Query: 429 XXXRSIYGER---FEDE-NFKLKHYGAG 500
+ +YGE+ ++DE + LKH G
Sbjct: 65 SIYKFLYGEQARFYKDEIHLDLKHSKTG 92
>At1g74070.1 68414.m08579 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 317
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +2
Query: 533 NGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
NG++F IT V +P L+ +V GKVLEGM VV+K+
Sbjct: 230 NGTEFVITAVDSPELEDSVLVIGKVLEGMGVVEKM 264
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 261 IGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFM 395
IG I+IGL+G VP T F + G Y+ F +++ ++
Sbjct: 105 IGRIIIGLYGDDVPAGTARFSSIVSGKAGITYRRKDFVKIMPGYV 149
>At3g66654.3 68416.m00779 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 236
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +3
Query: 264 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 401
G I + LF + P+ + F L QK + +KG F RVIKN+++Q
Sbjct: 90 GLITVELFKEGSPEVVDKFLDLCQK---DHFKGMPFQRVIKNYLVQ 132
Score = 35.1 bits (77), Expect = 0.040
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +2
Query: 542 QFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
+ ITT P L+ + +VFG+VL+G DVVQ+I
Sbjct: 179 ELLITTAPIPDLNDQLIVFGRVLKGEDVVQEI 210
>At3g66654.2 68416.m00778 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 236
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +3
Query: 264 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 401
G I + LF + P+ + F L QK + +KG F RVIKN+++Q
Sbjct: 90 GLITVELFKEGSPEVVDKFLDLCQK---DHFKGMPFQRVIKNYLVQ 132
Score = 35.1 bits (77), Expect = 0.040
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +2
Query: 542 QFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
+ ITT P L+ + +VFG+VL+G DVVQ+I
Sbjct: 179 ELLITTAPIPDLNDQLIVFGRVLKGEDVVQEI 210
>At3g66654.1 68416.m00777 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 236
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +3
Query: 264 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 401
G I + LF + P+ + F L QK + +KG F RVIKN+++Q
Sbjct: 90 GLITVELFKEGSPEVVDKFLDLCQK---DHFKGMPFQRVIKNYLVQ 132
Score = 35.1 bits (77), Expect = 0.040
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +2
Query: 542 QFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
+ ITT P L+ + +VFG+VL+G DVVQ+I
Sbjct: 179 ELLITTAPIPDLNDQLIVFGRVLKGEDVVQEI 210
>At5g35100.1 68418.m04153 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 290
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +2
Query: 527 DTNGSQFFITTVK--TPWLDGRHVVFGKVLEGMDVVQKI 637
D +F ITT +P LDG ++VFG VLEG+DVV I
Sbjct: 191 DYRNVEFLITTGPGPSPQLDGGNIVFGTVLEGLDVVTSI 229
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 261 IGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRV 380
+G +V+GL+G+ VP T F ++ YK + H++
Sbjct: 85 LGRVVLGLYGRHVPITVSTFKRMCTS-SSTSYKNTPVHKI 123
>At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to peptidyl-prolyl cis-trans isomerase PPIase
(cyclophilin, cyclosporin A-binding protein) [Tomato]
SWISS-PROT:P21568
Length = 232
Score = 37.9 bits (84), Expect = 0.006
Identities = 33/112 (29%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
Frame = +3
Query: 264 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG-------YKGSKFHRVIKNFMIQXXXXXXX 422
G IVI LF P+T ENF L G G YKGS F ++ + M
Sbjct: 18 GRIVIELFADLTPRTAENFRGLCTGERGIGKCGKPIHYKGSTFDHIVPDLM----WCGGD 73
Query: 423 XXXXXRSIYGERFEDENFKLKHY-GAGWLSWLMQAKTQMDLNFSSQLLRHPG 575
I+ E +DE F L H G G +S +Q ++ L+ G
Sbjct: 74 IIFENEPIHSEELDDEYFILNHEDGPGIISMADSNGSQFQIHMKDYGLQVDG 125
Score = 36.7 bits (81), Expect = 0.013
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +2
Query: 527 DTNGSQFFITTVKTPW-LDGRHVVFGKVLEGMDVVQKI 637
D+NGSQF I +DG HVV GKV+EG+D+++ I
Sbjct: 106 DSNGSQFQIHMKDYGLQVDGDHVVIGKVVEGLDLMRNI 143
>At2g47320.1 68415.m05907 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 230
Score = 35.5 bits (78), Expect = 0.030
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 264 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGY-KGSKFHRVIKNFMIQ 401
G++ I LF T P + F + Q +GY KG F RV+K+F+IQ
Sbjct: 87 GSVTIELFKDTAPNVVDQFMKFCQ----DGYFKGFLFSRVVKHFVIQ 129
Score = 34.3 bits (75), Expect = 0.069
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +2
Query: 497 WLVIMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 637
++V A + G +FFI + + L+ + VFG+V +G DVVQ+I
Sbjct: 158 FMVGTPKAKNEQGGFEFFIVSAQIKDLNEKLTVFGRVSKGQDVVQEI 204
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,935,100
Number of Sequences: 28952
Number of extensions: 279830
Number of successful extensions: 616
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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