Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00042
         (758 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16280.1 68415.m01864 very-long-chain fatty acid condensing e...    30   1.9  
At1g49010.1 68414.m05495 myb family transcription factor contain...    29   2.5  
At5g58530.1 68418.m07329 glutaredoxin family protein                   29   3.4  
At5g23920.1 68418.m02809 expressed protein                             28   5.9  
At5g10270.1 68418.m01192 cyclin-dependent kinase, putative / CDK...    28   5.9  
At2g38650.1 68415.m04747 glycosyl transferase family 8 protein c...    28   7.7  

>At2g16280.1 68415.m01864 very-long-chain fatty acid condensing
           enzyme, putative similar to fatty acid condensing enzyme
           CUT1 GI:5001734 from [Arabidopsis thaliana]
          Length = 512

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 317 RKVTQEIFSIHSKYSKCSYNYITTTQFRICHV 412
           RK+   + S++ KY K  Y+Y+ T  F++C V
Sbjct: 23  RKLPNFLQSVNMKYVKLGYHYLITHLFKLCLV 54


>At1g49010.1 68414.m05495 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 314

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 462 GVRPLGLPSTPTPQLPQCHP 521
           GV P  +P+ P P LPQ HP
Sbjct: 289 GVAPYAVPAYPVPPLPQQHP 308


>At5g58530.1 68418.m07329 glutaredoxin family protein
          Length = 273

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +3

Query: 573 WKRSSKKPSHF*KILTPETIMFQRNHKLHPCDTPLVEYPPSPSPK 707
           W++SS K  H     +P T  F+  H L   D+P     PSPSPK
Sbjct: 5   WRKSSVK-IH--DTYSPTTASFKDIHHLCSDDSPSFPSSPSPSPK 46


>At5g23920.1 68418.m02809 expressed protein 
          Length = 229

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +1

Query: 193 KFLNPIISRKPKLQRQRKIFNNKEKIFQDHLMAICIFLLLF 315
           +FL+     + + ++++++ N K K+FQ + +A  I  LLF
Sbjct: 65  EFLSRFAFPRKQTEQKKRLSNPKNKLFQAYFLATAIIGLLF 105


>At5g10270.1 68418.m01192 cyclin-dependent kinase, putative / CDK,
           putative similar to cyclin dependent kinase C
           [Lycopersicon esculentum] gi|15215944|emb|CAC51391
          Length = 505

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 139 RHGMALELEPQGLLFAEIKFLNPIISRKPKLQRQRKIF 252
           ++G A+++   G +FAE+    PI+  K + ++  KIF
Sbjct: 217 KYGPAIDMWSVGCIFAELLHAKPILPGKNEQEQLNKIF 254


>At2g38650.1 68415.m04747 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 619

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -1

Query: 473 GPYSSHTPKCNIRIFNFSIIKRGRFETVLL*CSYMSILNI--LNGWR 339
           G  +     C +R+     +KRG F+T    C +MS LN+  L  WR
Sbjct: 469 GKVNGAVKSCTVRLGQLRSLKRGNFDTNA--CLWMSGLNVVDLARWR 513


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,815,964
Number of Sequences: 28952
Number of extensions: 358083
Number of successful extensions: 1080
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)