Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00038
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53490.1 68416.m05905 expressed protein ADAM 13, Xenopus laev...    29   2.5  
At2g41360.1 68415.m05105 F-box family protein similar to SKP1 in...    29   4.3  
At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein...    27   10.0 
At1g30130.2 68414.m03683 expressed protein similar to hypothetic...    27   10.0 
At1g30130.1 68414.m03682 expressed protein similar to hypothetic...    27   10.0 

>At3g53490.1 68416.m05905 expressed protein ADAM 13, Xenopus laevis,
           EMBL:XLU66003
          Length = 225

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 597 FHKQPTTIFGFQSKGSNLSLVPDVRLNCPGHIFNGTMS 710
           F  +PT  F  Q KG N +++PDV+     + FNG  S
Sbjct: 48  FSTKPTVFF--QCKGENKTVLPDVKRTNVSYSFNGEES 83


>At2g41360.1 68415.m05105 F-box family protein similar to SKP1
           interacting partner 6 [Arabidopsis thaliana]
           GI:10716957; contains Pfam profile PF00646: F-box domain
          Length = 373

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 172 RQVK*WLALMRINYRINSAYCILSTSAW*GIVSSRGGVTNGVRCLEASD 318
           ++ K W AL+ +N R+    C   T  W G+V++   +   + CL ASD
Sbjct: 328 KEEKIWSALIALN-RVGDGIC--GTIEWSGVVATIPYICQFLHCLVASD 373


>At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 457

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 639 GSNLSLVPDVRLNCPGHIFNGTMSDVNEMHEFSEK 743
           GS++S VPD  L+C G   + T+ ++N +   S K
Sbjct: 30  GSSVSSVPDSVLSCVGADASSTLVEMNRVRPSSPK 64


>At1g30130.2 68414.m03683 expressed protein similar to hypothetical
           protein GI:1469227 from [Brassica oleracea]
          Length = 311

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 17  FHYLQQHKVYIRLYYHHYSYCWTQVSF 97
           F +L  HKV I +Y+H     W  V F
Sbjct: 220 FFWLMPHKVAIWIYWHALQLWWKSVPF 246


>At1g30130.1 68414.m03682 expressed protein similar to hypothetical
           protein GI:1469227 from [Brassica oleracea]
          Length = 311

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 17  FHYLQQHKVYIRLYYHHYSYCWTQVSF 97
           F +L  HKV I +Y+H     W  V F
Sbjct: 220 FFWLMPHKVAIWIYWHALQLWWKSVPF 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,965,078
Number of Sequences: 28952
Number of extensions: 294793
Number of successful extensions: 611
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)